Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45910 650 / 0 U-box domain-containing protein kinase family protein (.1) AT3G49060 414 / 2e-131 U-box domain-containing protein kinase family protein (.1.2) AT5G61560 346 / 5e-106 U-box domain-containing protein kinase family protein (.1.2) AT4G25160 347 / 6e-106 U-box domain-containing protein kinase family protein (.1) AT5G61550 340 / 2e-103 U-box domain-containing protein kinase family protein (.1.2) AT5G51270 338 / 5e-103 U-box domain-containing protein kinase family protein (.1) AT2G19410 333 / 5e-101 U-box domain-containing protein kinase family protein (.1) AT5G57035 329 / 1e-99 U-box domain-containing protein kinase family protein (.1) AT1G78940 295 / 3e-88 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) AT5G12000 293 / 2e-87 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G084900 [exp] 1347 / 0 AT2G45910 857 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.002G160300 [exp] 566 / 0 AT2G45910 559 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.012G143100 [exp] 499 / 3e-164 AT3G49060 706 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Potri.009G030400 [exp] 389 / 6e-122 AT2G45910 398 / 5e-126 U-box domain-containing protein kinase family protein (.1) Potri.001G239100 [exp] 383 / 1e-120 AT2G45910 473 / 6e-156 U-box domain-containing protein kinase family protein (.1) Potri.004G233000 [exp] 343 / 7e-105 AT4G25160 874 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.006G147000 [exp] 318 / 2e-96 AT5G57035 674 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.018G002400 [exp] 298 / 1e-88 AT2G24370 956 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.006G078500 [exp] 286 / 2e-84 AT2G24370 824 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014772 [exp] 1004 / 0 AT3G49060 901 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Lus10036362 [exp] 1003 / 0 AT3G49060 895 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Lus10036359 [exp] 633 / 0 AT2G45910 598 / 0.0 U-box domain-containing protein kinase family protein (.1) Lus10036363 [exp] 498 / 7e-165 AT2G45910 528 / 9e-178 U-box domain-containing protein kinase family protein (.1) Lus10018835 [exp] 437 / 7e-141 AT2G45910 522 / 4e-174 U-box domain-containing protein kinase family protein (.1) Lus10027490 [exp] 429 / 6e-138 AT3G49060 514 / 2e-171 U-box domain-containing protein kinase family protein (.1.2) Lus10039245 [exp] 425 / 3e-135 AT3G49060 556 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Lus10016557 [exp] 391 / 1e-122 AT2G45910 508 / 3e-168 U-box domain-containing protein kinase family protein (.1) Lus10040825 [exp] 382 / 3e-119 AT2G45910 496 / 1e-163 U-box domain-containing protein kinase family protein (.1) Lus10024212 [exp] 301 / 2e-89 AT2G24370 780 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0229 [poplar] [flax] RING PF04564 [poplar] [flax] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Potri.002G160200.1 pacid=42780128 polypeptide=Potri.002G160200.1.p locus=Potri.002G160200 ID=Potri.002G160200.1.v4.1 annot-version=v4.1 ATGGCTGTGGTGAGTCGTGCCTGTTGCGATAACGCAACAAGCGAGTCCATTGACGTTTGTGGAATTAGAGTGGCAGGAAACATGGAAAGTGGTAGAGAGA TTGTGGAAGAACCGGTTGCAAGAGTAATTGAAGATAAGATCTTTGTTGCTGTGGGAAAATCCGTGAAGGAATGTAAATTGATGCTTCTTTGGGCTTTACA GAATTCAGGAGGCAAAAGAATTTGCATCATTCATGTTCTCCAACCGTCGCAAATGATTCCGTTAATGGGTACCAAATTCCGGGCCAGTGCACTAAAAGAA CAGGAAGTGAGGGCATACCGGGAAGTTGAAAGGCAAGCGATGCATAAGATGCTAGATGAATACCTTTCTATCTGTCGAAAAATGGGGGTTCGGGCTGAGA AGCTGTATGTTGAAATGGAGTCTATTGAGAAGGGAATTTTAGAACTCATTTCTCACCATGGGATCAAGAAGCTTGTTATGGGAGCAGCAGCAGACAAGCG CCATTCAAAGAATATGATGGACATCAAGTCTAAGAAGGCCATCTCTGTTTGCCTGCAAGCACCTGCTTCCTGTCACATATGGTTTATTTGCAAGGGGCAC CTTATCCACACACGGGAAGGTGCTCTGGATGGAACTGGTACGGATGTTGGATCTTCATCACAGCAAACAAGTCCACATACTGAAGCTGGACAATTAAGTC ATATGAGATCACAGTCTATTGCCCTTGGCCAGAACCATTTTGTGAAACTCACCAATCCAGCTCAAGATTTAGTCCGAAGGGTAAGATCTATGAATGTTAA TGGACGTGGAGGAAGATTATCAACTCCTGCTTCACCAGATGGGGGGCCATCAACTCCATCAAGCAGATCAGATGCAGATGGGAGTTCTGATGAATATGAT GTGTTGTCAAGGAGTGCTTCCCAAAATTCAGCTCTCTCATCATGCACTTCCCGTGGAATGGTCAATGTTGCTTTGGTTCCATTTGTAGGAACTGAAGAGA GTGAGACTGGGTCAGAGTTGAGTACACTGCCTCAGCACAAGGAGGATCTTTGCCAGTCATCCCCTCCCAGTGTACTGGATGGTAGTACAGAGGATCCTCT GTATGATCAACTTGAAAAAGCAATGTCTGATGCTGAAAATTCAAGGCGTGAAGCATTTGAAGAGGCAGTCAGGCGTGCAAAAGCAGAAAAATACGCATTT GAGGCCACACGCAAGGCCAAAGCATCAGAAAACTTGTATACAGAGGAGTCAAAACGAAGGAAAGAAGTTGAGGAAGAACTAGCAAAAGAAAAGGAAGAAC TTGAAAGGATAAATAGAGAATGTGATGAAGTCATGGAAGAACTTCGCATTGCCGAGGATCAGAAATCATTGTTGGAGAAGCAAATCAAAGAATCTGATCA GATGGTAAAGGAGTTGGAGCAGAAAATCATCTCTGCTGTGGGACTTTTGCAAAATTACAAGAAAGAACAGGATGAACTGCAGAAGGAGCGTGACAATGCA CTGAAAGAAGTTGAGGAGCTGAGGAGAAGTCAAACAGAGGCCTCAGGCACACACATGTCTCAGTTCTTCTCTGAGTTCTCTCTCTCAGAAATTGAGGAGG CAACTCAACATTTTGATCCATCCCTTAAGATTGGGGAAGGGGGATATGGTAGCATTTATAAAGGTGTGTTGCGCCAAACCCAGGTGGCTGTAAAGATGCT GCACTCTAATAGCTTGCAAGGTCCTGCGGAATTTCAACAGGAGGTCGATGTTTTGAGCAAGATGAGACATCCAAATCTTATCACTCTCATTGGAGCATGT CCAGAAGCTTGGACTCTTATCTATGAGTATCTTCCCAATGGAAGCCTTGAAGACCGACTGAGCTGCAGGGACAACAGTCCACCTTTATCTTGGCAAACTC GAATACGCATTGCCGCTGAATTATGCTCGGTTCTCATCTTTCTTCACTCTAGTAAACAACACAGCATTGTGCACGGTGACCTTAAGCCTGCTAACATCCT CCTTGATGAAAATTTTGTCACTAAACTAAGTGACTTTGGAATCTGTCGTCTACTTCATCACAAGGAAGGTTCTAGCAACAACACAGCAATATGCAGAACT GATCCCAAAGGCACCTTTTCATATATGGATCCTGAATTTCTTTCCACTGGAGAGCTAACTCCAAAGTCGGATGTTTATTCATTTGGAATTATATTGTTAA GATTGTTAACTGCAAGACAGCCCTTGGGTATTACAAAGGAGGTGCAGTGTGAATTAGATAAAGGAAACTTGAAAACCCTCTTGGATCCTTTGGCAGGAGA TTGGCCATTTGTGCAAGCTGAACAGTTGGCTCACTTGGCACTGAGGTGCTGTGAGATGAGCAGAAAGAACCGGCCAGATCTTTTATCAGAAGTATGGAGG GTACTTGAGCCAATGAAGGCTTCGTGTGGAGGCTCATCATTTTTCCAGCTTGGTTCGGAAGAGCATTTCCAACCTCCTTCATATTTTATATGCCCCATTT TCCAGGAAGTAATGCGAGATCCACATGTAGCAGCTGATGGTTATACTTATGAAGCAGAGGCCTTGAAAGGATGGCTGGACAGCGGACATGATACTTCACC CATGACCAACCTTAAGCTCGCACATCGTGATCTTATCCCTAACCGTGCACTTCGCTCAGCAATTCAGGAGTGGCTGCAACAGCAGTGA
AA sequence Show only first row Show all	>Potri.002G160200.1 pacid=42780128 polypeptide=Potri.002G160200.1.p locus=Potri.002G160200 ID=Potri.002G160200.1.v4.1 annot-version=v4.1 MAVVSRACCDNATSESIDVCGIRVAGNMESGREIVEEPVARVIEDKIFVAVGKSVKECKLMLLWALQNSGGKRICIIHVLQPSQMIPLMGTKFRASALKE QEVRAYREVERQAMHKMLDEYLSICRKMGVRAEKLYVEMESIEKGILELISHHGIKKLVMGAAADKRHSKNMMDIKSKKAISVCLQAPASCHIWFICKGH LIHTREGALDGTGTDVGSSSQQTSPHTEAGQLSHMRSQSIALGQNHFVKLTNPAQDLVRRVRSMNVNGRGGRLSTPASPDGGPSTPSSRSDADGSSDEYD VLSRSASQNSALSSCTSRGMVNVALVPFVGTEESETGSELSTLPQHKEDLCQSSPPSVLDGSTEDPLYDQLEKAMSDAENSRREAFEEAVRRAKAEKYAF EATRKAKASENLYTEESKRRKEVEEELAKEKEELERINRECDEVMEELRIAEDQKSLLEKQIKESDQMVKELEQKIISAVGLLQNYKKEQDELQKERDNA LKEVEELRRSQTEASGTHMSQFFSEFSLSEIEEATQHFDPSLKIGEGGYGSIYKGVLRQTQVAVKMLHSNSLQGPAEFQQEVDVLSKMRHPNLITLIGAC PEAWTLIYEYLPNGSLEDRLSCRDNSPPLSWQTRIRIAAELCSVLIFLHSSKQHSIVHGDLKPANILLDENFVTKLSDFGICRLLHHKEGSSNNTAICRT DPKGTFSYMDPEFLSTGELTPKSDVYSFGIILLRLLTARQPLGITKEVQCELDKGNLKTLLDPLAGDWPFVQAEQLAHLALRCCEMSRKNRPDLLSEVWR VLEPMKASCGGSSFFQLGSEEHFQPPSYFICPIFQEVMRDPHVAADGYTYEAEALKGWLDSGHDTSPMTNLKLAHRDLIPNRALRSAIQEWLQQQ

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45910			U-box domain-containing protei...		Potri.002G160200 [exp]	0	1
AT4G30600			signal recognition particle re...		Potri.018G105900 [exp]	7.48	0.7084
AT1G74740		CDPK1A, CPK30, ...	CALCIUM-DEPENDENT PROTEIN KINA...		Potri.015G066200 [exp]	11.22	0.7590	Pt-CDPK1.4
AT1G61690			phosphoinositide binding (.1)		Potri.011G032200 [exp]	13.96	0.6320
AT3G09090		DEX1	DEFECTIVE IN EXINE FORMATION 1...		Potri.016G110800 [exp]	15.00	0.6281
AT2G28710	C2H2ZnF		C2H2-type zinc finger family p...		Potri.008G051200 [exp]	18.81	0.7435
AT3G23410		ATFAO3	ARABIDOPSIS FATTY ALCOHOL OXID...		Potri.008G169300 [exp]	28.39	0.6751
AT5G04870		AK1, ATCPK1, CP...	calcium dependent protein kina...		Potri.010G244800 [exp]	29.73	0.6308	CPK1,Pt-CPK2.1
AT3G57120			Protein kinase superfamily pro...		Potri.008G037501 [exp]	30.85	0.7047
AT5G28040	GeBP		DNA-binding storekeeper protei...		Potri.001G261700 [exp]	42.95	0.6747
AT1G73760			RING/U-box superfamily protein...		Potri.015G043900 [exp]	67.32	0.6453

Compare expression of checked genes

Potri.002G160200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.