Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01650 838 / 0 ATSPPL4 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) AT1G63690 796 / 0 ATSPPL2 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) AT2G43070 461 / 5e-158 ATSPPL3 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1) AT1G05820 432 / 2e-146 ATSPPL5 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 5, SIGNAL PEPTIDE PEPTIDASE-LIKE 5 (.1.2) AT4G33410 103 / 9e-24 ATSPPL1 SIGNAL PEPTIDE PEPTIDASE-LIKE 1 (.1) AT2G03120 99 / 1e-22 ATSPP signal peptide peptidase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G085300 [exp] 1015 / 0 AT1G01650 810 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Potri.003G128500 [exp] 853 / 0 AT1G63690 857 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Potri.001G103100 [exp] 826 / 0 AT1G63690 829 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Potri.002G232200 [exp] 476 / 5e-164 AT2G43070 626 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1) Potri.014G150000 [exp] 454 / 2e-155 AT2G43070 570 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1) Potri.012G142400 [exp] 105 / 1e-24 AT4G33410 633 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 1 (.1) Potri.015G145600 [exp] 100 / 8e-23 AT4G33410 614 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 1 (.1) Potri.001G276700 [exp] 94 / 6e-21 AT2G03120 550 / 0.0 signal peptide peptidase (.1) Potri.009G071600 [exp] 94 / 8e-21 AT2G03120 542 / 0.0 signal peptide peptidase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017796 [exp] 858 / 0 AT1G01650 802 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Lus10031104 [exp] 808 / 0 AT1G63690 872 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Lus10018834 [exp] 726 / 0 AT1G01650 685 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Lus10024653 [exp] 726 / 0 AT1G63690 744 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Lus10032285 [exp] 695 / 0 AT1G63690 713 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Lus10036364 [exp] 675 / 0 AT1G01650 608 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Lus10014769 [exp] 665 / 0 AT4G00370 662 / 0.0 anion transporter 2, Major facilitator superfamily protein (.1) Lus10001154 [exp] 467 / 3e-160 AT1G05820 563 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 5, SIGNAL PEPTIDE PEPTIDASE-LIKE 5 (.1.2) Lus10035484 [exp] 346 / 4e-115 AT1G63690 364 / 3e-122 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Lus10019557 [exp] 196 / 4e-58 AT2G43070 245 / 2e-77 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0364 [poplar] [flax] Leu-IlvD PF02225 [poplar] [flax] PA PA domain CL0130 [poplar] [flax] Peptidase_AD PF04258 [poplar] [flax] Peptidase_A22B Signal peptide peptidase
Representative CDS sequence Show only first row Show all	>Potri.002G160500.5 pacid=42777417 polypeptide=Potri.002G160500.5.p locus=Potri.002G160500 ID=Potri.002G160500.5.v4.1 annot-version=v4.1 ATGGATACTTATAAAAAGGTATATCTGTTAATAGCTTTGCTAGCTTCAAGCTTTTGTTTGGGATCAGCCGGTGATATAGTTCACCACGACGACGTCGCTC CTAAGCGGCCTGGCTGTGAAAATAACTTCGTTCTGGTCAAAGTACCAACTTGGATTAATGGCGTAGAAGACATTGAGTATGTTGGTGTCGGTGCTCGTTT TGGTCTCACTTTGGAATCGAAGGAAAAACATGCTAATTTATTTATACTTGCCCTGGCTGACCCTCCTGATTGTTGTAGCAAACCCAAAAATAAGCTTTCA GGGGAGATCATATTGGCGCACCGAGGTAACTGTAGCTTCACAACAAAGGCAAATGTTGCCGAAGATGCTGGTGCTTCAGCTATTCTCATCATAAACAACC GGACAGAACTGTTCAAGATGGTTTGTGAAGTCAATGAAACTGATGTAAAGATTGGCATTGCTTCTGTCATGCTCCCACAAGATGCTGGTGCAAGCTTGGA AAAATATTTGACGAGCAGCTCATCAGTTAAAGTGCAGCTATACTCACCACGACGTCCAGTGGTGGATGTTGCAGAAGTGTTCTTATGGCTTATGGCTGTC GGTACCATTTTATGTGCCTCTTACTGGTCTGCATGGAGTGCAAGAGAAGCTGCTATAGAGCAGGATAAGCTATTGAAGGATGGTTTGGATGAATTGATTC ATATGGATGGTGTCCGTTCCAGTGGTATTGTTAACATCAACACGACATCTGCAATTCTCTTCGTTGTGATCGCTTCTTGTTTCTTAGTTATGCTTTACAA ACTTATGTCGTACTGGTTTATCGAGGTTCTGGTGGTTCTGTTTTGCATTGGGGGAGTGGAGGGCTTGCAAACTTGCTTGGCTGCTTTGTTATCATGTTTC AGATGGTTTCAACCTGCGGGGGAATCATTTGTTAAAGTTCCCTTCTTTGGAGCTGTCTCGTATCTAACACTGGCAGTCTCTCCTTTCTGCATAGCATTTG CTGTTGTTTGGGCAGTTTTCCGCTCTATCTCCTTTGCCTGGATAGGTCAAGATATCCTTGGTATTGCTCTGATCATTACAGTTCTTCAGATCGTTCGTGT GCCAAATCTCAAGGTTGGAACAATTCTTCTAAGTTGTGCCTTCTTGTATGACATCTTCTGGGTTTTTGTTTCGAAATGGTTGTTCAAGGAGAGTGTTATG ATTGTGGTGGCTCGTGGTGATAAGAGTGGAGAGGATGGTATACCGATGCTACTGAAAATCCCACGGATGTTTGATCCTTGGGGTGGCTATAGCATAATTG GGTTTGGTGACATCATCTTACCAGGATTGCTTGTAGCTTTTTCATTAAGGTATGACTGGCTTGCGAAGAAGAATCTTCGAGCAGGATACTTCTTGTGGGC AATGACTGCTTATGGTTTAGGTCTCCTGGTAACATACGTAGCTTTGAACATGATGGATGGGCATGGCCAGCCAGCTTTGCTTTACATTGTTCCATTCACC CTTGGTACCTTTTTGACGTTGGGAAAGCAAAGAGGAGATCTGAAAGCATTATGGACAATGGGAGAGCCTGAAAGGCCCTGCCGGCACATCCAATTTCAAC CCTCTGGATCTTAG
AA sequence Show only first row Show all	>Potri.002G160500.5 pacid=42777417 polypeptide=Potri.002G160500.5.p locus=Potri.002G160500 ID=Potri.002G160500.5.v4.1 annot-version=v4.1 MDTYKKVYLLIALLASSFCLGSAGDIVHHDDVAPKRPGCENNFVLVKVPTWINGVEDIEYVGVGARFGLTLESKEKHANLFILALADPPDCCSKPKNKLS GEIILAHRGNCSFTTKANVAEDAGASAILIINNRTELFKMVCEVNETDVKIGIASVMLPQDAGASLEKYLTSSSSVKVQLYSPRRPVVDVAEVFLWLMAV GTILCASYWSAWSAREAAIEQDKLLKDGLDELIHMDGVRSSGIVNINTTSAILFVVIASCFLVMLYKLMSYWFIEVLVVLFCIGGVEGLQTCLAALLSCF RWFQPAGESFVKVPFFGAVSYLTLAVSPFCIAFAVVWAVFRSISFAWIGQDILGIALIITVLQIVRVPNLKVGTILLSCAFLYDIFWVFVSKWLFKESVM IVVARGDKSGEDGIPMLLKIPRMFDPWGGYSIIGFGDIILPGLLVAFSLRYDWLAKKNLRAGYFLWAMTAYGLGLLVTYVALNMMDGHGQPALLYIVPFT LGTFLTLGKQRGDLKALWTMGEPERPCRHIQFQPSGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G01650		ATSPPL4	ARABIDOPSIS THALIANA SIGNAL PE...		Potri.002G160500 [exp]	0	1
AT2G45690		PEX16, SSE1, AT...	SHRUNKEN SEED 1, ARABIDOPSIS P...		Potri.014G078300 [exp]	6.92	0.5518	Pt-SSE1.1
AT4G12010			Disease resistance protein (TI...		Potri.013G097832 [exp]	11.04	0.6086
AT5G50180			Protein kinase superfamily pro...		Potri.001G343900 [exp]	18.57	0.5801
AT5G17680			disease resistance protein (TI...		Potri.013G097300 [exp]	21.56	0.6044
AT5G26030		FC1, FC-I, ATFC...	ferrochelatase 1 (.1.2)		Potri.006G232100 [exp]	21.90	0.5903
AT1G65840		ATPAO4	polyamine oxidase 4 (.1)		Potri.004G075800 [exp]	22.60	0.5613
AT3G52190		AtPHF1, PHF1	phosphate transporter traffic ...		Potri.010G232400 [exp]	36.76	0.5194
AT3G58040		SINAT2	seven in absentia of Arabidops...		Potri.016G059700 [exp]	44.27	0.5569
AT1G29690		CAD1	constitutively activated cell ...		Potri.011G075500 [exp]	47.33	0.5576
					Potri.001G353250 [exp]	58.58	0.4917

Compare expression of checked genes

Potri.002G160500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.