Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61415 426 / 9e-150 ASK21 SKP1-like 21 (.1.2) AT2G45950 412 / 1e-144 ASK20 SKP1-like 20 (.1.2) AT3G21850 82 / 1e-18 ASK9 SKP1-like 9 (.1) AT4G34210 72 / 5e-15 ASK11 SKP1-like 11 (.1) AT2G03170 70 / 3e-14 ASK14 SKP1-like 14 (.1) AT1G75950 69 / 1e-13 UIP1, SKP1A, ATSKP1, ASK1, SKP1 UFO INTERACTING PROTEIN 1, ARABIDOPSIS SKP1 HOMOLOGUE 1, S phase kinase-associated protein 1 (.1) AT4G34470 68 / 1e-13 ASK12 SKP1-like 12 (.1) AT5G42190 66 / 8e-13 SKP1B, ASK2 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) AT2G25700 66 / 1e-12 ASK3 SKP1-like 3 (.1) AT1G20140 65 / 2e-12 ASK4 SKP1-like 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G085400 [exp] 544 / 0 AT3G61415 406 / 5e-142 SKP1-like 21 (.1.2) Potri.012G143500 [exp] 433 / 2e-152 AT3G61415 394 / 4e-137 SKP1-like 21 (.1.2) Potri.015G146500 [exp] 422 / 2e-148 AT2G45950 350 / 3e-120 SKP1-like 20 (.1.2) Potri.002G018700 [exp] 74 / 1e-15 AT5G42190 249 / 6e-86 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Potri.009G135800 [exp] 72 / 6e-15 AT1G20140 215 / 9e-73 SKP1-like 4 (.1) Potri.004G175900 [exp] 69 / 5e-14 AT5G42190 245 / 2e-84 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Potri.005G109900 [exp] 69 / 6e-14 AT5G42190 249 / 5e-86 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Potri.005G243100 [exp] 68 / 2e-13 AT1G75950 244 / 2e-84 UFO INTERACTING PROTEIN 1, ARABIDOPSIS SKP1 HOMOLOGUE 1, S phase kinase-associated protein 1 (.1) Potri.012G086900 [exp] 46 / 5e-06 AT4G34210 130 / 1e-39 SKP1-like 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014770 [exp] 472 / 1e-167 AT3G61415 468 / 2e-166 SKP1-like 21 (.1.2) Lus10017795 [exp] 458 / 2e-162 AT3G61415 445 / 2e-157 SKP1-like 21 (.1.2) Lus10018833 [exp] 470 / 6e-159 AT3G61415 457 / 1e-153 SKP1-like 21 (.1.2) Lus10036365 [exp] 336 / 1e-114 AT3G61415 424 / 1e-149 SKP1-like 21 (.1.2) Lus10019794 [exp] 73 / 4e-15 AT1G75950 241 / 8e-83 UFO INTERACTING PROTEIN 1, ARABIDOPSIS SKP1 HOMOLOGUE 1, S phase kinase-associated protein 1 (.1) Lus10013575 [exp] 72 / 9e-15 AT1G75950 255 / 2e-88 UFO INTERACTING PROTEIN 1, ARABIDOPSIS SKP1 HOMOLOGUE 1, S phase kinase-associated protein 1 (.1) Lus10017281 [exp] 71 / 1e-14 AT5G42190 259 / 4e-90 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Lus10005610 [exp] 71 / 1e-14 AT5G42190 261 / 2e-90 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Lus10017282 [exp] 71 / 1e-14 AT5G42190 259 / 6e-90 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Lus10014115 [exp] 71 / 3e-13 AT1G68010 700 / 0.0 hydroxypyruvate reductase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01466 [poplar] [flax] Skp1 Skp1 family, dimerisation domain
Representative CDS sequence Show only first row Show all	>Potri.002G160600.1 pacid=42777921 polypeptide=Potri.002G160600.1.p locus=Potri.002G160600 ID=Potri.002G160600.1.v4.1 annot-version=v4.1 ATGTCAGAAGTTGATATGGCTGTAGTAAAACCTGAGATGATGAGATCGTATATCTGGATTCAAACCACGGATGGTGCAGTTCAGCAAGTGGAACAAGAAG TTGCCATGTTTTGCCCCATGATATGTCAGGAAGTAATACTAAAGGGAATGGGGTCTTCTAAGAACTATGCTATATCTCTACCACAAAGAGTTGGTACATC CATGTTTAGCCTAATTCTTGATTTCTGCAGGTTTCATCAAGTACCTGGTCGCTCTAACAAGGAACGCAAGTCTTTTGATGAGAAGTTTGTTCGAATGGAC ACAAAGAGGCTTTGTGAGTTGACTTCTGCCGCTGAAAGCCTTCAGCTAAAGCCCTTGGTTGATCTTACTAGCCGCGCACTTGCACGAATCATTGAAGGGA AAACCCCTGAGGAGATACGTGAGATATTTCATTTGCCTGATGATCTAACAGAGGAAGAGAAACTAGAGCCTTTGAAGAACACAACTGATGATCCACGGAT CCGACTTCTAAATCGATTGTATGCGAAGAAGAGGAAAGAACTGAAAGAGAGAGAGAAACTAAAGAATGTCGAGGCCGAAGAGGAGCATGTGGATGACCGC TCAGTTGATGACCTCTTATCATTCATCAACGGAGGAGATGGAGATTCCAAAGGGATGAAAACTTCCAAGAATAGAAAGAAACAACAAAAAAGAAAAGATC GGCAAAAGTGTGCCCCTGAAATGCATAAAAAGGAGTCTAATGTTTTTAGTTCGTTATGCCATAATTCCAAGGATGATCATGAATTACAGTCCAGCCTCAG AGAGAAATTAAATTTACAAGATGCGGCAGATGTAATTTTTTCTCCCACAGTGGAGTTTGAGGATGTTGATATTGATGGCGAGATAGATCCAGCTTTAAAA GAAGAAATTGATAGGGAGGTTGAAGATTTTGCTCGAATACTAAATTCAGATTGGCCTGAAAGGATGCAGGAGCTTCTATCTTTGGGTCAAGAGAGGAGAC CGGCACAATTATCTATTAATGGCAATGGCAATTTGAAAAGATATGGAACATTATTCCCCGAACCCTAA
AA sequence Show only first row Show all	>Potri.002G160600.1 pacid=42777921 polypeptide=Potri.002G160600.1.p locus=Potri.002G160600 ID=Potri.002G160600.1.v4.1 annot-version=v4.1 MSEVDMAVVKPEMMRSYIWIQTTDGAVQQVEQEVAMFCPMICQEVILKGMGSSKNYAISLPQRVGTSMFSLILDFCRFHQVPGRSNKERKSFDEKFVRMD TKRLCELTSAAESLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAKKRKELKEREKLKNVEAEEEHVDDR SVDDLLSFINGGDGDSKGMKTSKNRKKQQKRKDRQKCAPEMHKKESNVFSSLCHNSKDDHELQSSLREKLNLQDAADVIFSPTVEFEDVDIDGEIDPALK EEIDREVEDFARILNSDWPERMQELLSLGQERRPAQLSINGNGNLKRYGTLFPEP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G61415		ASK21	SKP1-like 21 (.1.2)		Potri.002G160600 [exp]	0	1
AT3G27440		UKL5	uridine kinase-like 5 (.1)		Potri.017G071200 [exp]	1.73	0.9334
AT1G13630			Tetratricopeptide repeat (TPR)...		Potri.010G137200 [exp]	2.00	0.8909
AT2G35330			RING/U-box superfamily protein...		Potri.001G144200 [exp]	4.24	0.8875
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.016G012500 [exp]	4.47	0.8908
AT5G16720			Protein of unknown function, D...		Potri.017G129200 [exp]	4.89	0.9144
					Potri.008G115533 [exp]	8.48	0.9024
AT2G32730			26S proteasome regulatory comp...		Potri.004G183675 [exp]	11.66	0.8860
AT1G26090			P-loop containing nucleoside t...		Potri.008G115401 [exp]	12.12	0.8725
AT3G47890			Ubiquitin carboxyl-terminal hy...		Potri.017G089250 [exp]	14.42	0.8467
AT3G10180			P-loop containing nucleoside t...		Potri.006G040700 [exp]	15.87	0.8795

Compare expression of checked genes

Potri.002G160600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.