Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00355 218 / 7e-70 ATI2 ATG8-interacting protein 2, unknown protein AT2G45980 188 / 1e-58 ATI1 ATG8-interacting protein 1, unknown protein AT4G10080 47 / 1e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G086000 [exp] 481 / 3e-173 AT4G00355 200 / 4e-63 ATG8-interacting protein 2, unknown protein Potri.019G071300 [exp] 43 / 0.0002 AT4G10080 125 / 3e-33 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036368 [exp] 258 / 4e-82 AT4G29910 219 / 2e-64 EMBRYO DEFECTIVE 2798, origin recognition complex protein 5 (.1) Lus10014767 [exp] 181 / 1e-55 AT2G45980 107 / 4e-28 ATG8-interacting protein 1, unknown protein Lus10002932 [exp] 47 / 1e-05 AT4G13530 176 / 7e-54 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G160700.7 pacid=42778142 polypeptide=Potri.002G160700.7.p locus=Potri.002G160700 ID=Potri.002G160700.7.v4.1 annot-version=v4.1 ATGGAGGGTAAAAACGAAGGGGAGGAGAATCGCTCTCGTGGGAATGATTGGGAGGTTGTATCTCTTACAGCATCAACATATGCAGCTGCTCCTGGTCCAA AAGAAGTTGATCAGAAGGATTACGAAAGCAGCAGGGCTTATGATGAGGATGGGGATGAAACTTCTCGGGCTTTATTCATGTCTCGTCATTTTGTGCTTCC ACCAGGTCAACATGAGAATTTGTCATTGGAACCTGTTAACAGTGAGATTCTTGATTCACAAGTAGGGAAGAATGTGCCCCCTGAGCTTGGTTTAGAAGAG GGAGGTAGATCCAGTTGTAAAAATGAAGAGATTTGGCCACTCAAGGGGTTGGATGAATCTGAAGAGTTTCATGGGATGCAGTTGTTTGATGTGAAGGGAA AAAATGGTAAAGAATTTGAAGAAAGCACAACTCTGCAAGATTTCAGTGACAAGGAACAAAGTATATACAGTACAGCGGCATTTGGTTCTCTACACAGCGA AACAGCACTTGGTGGATCAACCACATATGATGAGAACCTTGGAATTCCTGAAGTAAACGAACCTTCTGAAAAGGTCTTAGATTTTCCTACTGATGTTCCT TCCTCACCGAAAGCTGCCAAAGATGACAGCCTTCCTTGTGATGCTTGGTGGAAGAGAAGGGTGGCTTCCTTGCATGCTCATGCAAAAGAGGCAAATACAT TTTGGTCCATTTTTGTTGCAGCAGCTGTGATGGGAATTGTAATCCTTGGACAGCGCTGGCAGCAAGAAAGGTGGCAGGCTATCATCAACAATGAGAAAAG TGGGAGGATATTGGGGCCAATAACTCGTCTTAAAGATGTGATTGTGGGTGGCCATCGACGCGGTTCTTTTATCAGGGGAAGTACCTCAAGCGACAACTAA
AA sequence Show only first row Show all	>Potri.002G160700.7 pacid=42778142 polypeptide=Potri.002G160700.7.p locus=Potri.002G160700 ID=Potri.002G160700.7.v4.1 annot-version=v4.1 MEGKNEGEENRSRGNDWEVVSLTASTYAAAPGPKEVDQKDYESSRAYDEDGDETSRALFMSRHFVLPPGQHENLSLEPVNSEILDSQVGKNVPPELGLEE GGRSSCKNEEIWPLKGLDESEEFHGMQLFDVKGKNGKEFEESTTLQDFSDKEQSIYSTAAFGSLHSETALGGSTTYDENLGIPEVNEPSEKVLDFPTDVP SSPKAAKDDSLPCDAWWKRRVASLHAHAKEANTFWSIFVAAAVMGIVILGQRWQQERWQAIINNEKSGRILGPITRLKDVIVGGHRRGSFIRGSTSSDN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00355		ATI2	ATG8-interacting protein 2, un...		Potri.002G160700 [exp]	0	1
AT1G44770			unknown protein		Potri.005G176500 [exp]	2.00	0.8662
AT1G56090			Tetratricopeptide repeat (TPR)...		Potri.005G097300 [exp]	4.00	0.7888
AT3G20060		UBC19	ubiquitin-conjugating enzyme19...		Potri.008G041300 [exp]	4.24	0.7956
AT4G05000		VPS28-2, VPS28-...	vacuolar protein sorting-assoc...		Potri.004G035500 [exp]	4.47	0.8072
AT3G53690			RING/U-box superfamily protein...		Potri.013G120300 [exp]	4.89	0.8208
AT3G47300		SELT	SELT-like protein precursor (....		Potri.001G253000 [exp]	5.74	0.8358
AT2G04690			Pyridoxamine 5'-phosphate oxid...		Potri.001G470300 [exp]	9.48	0.7780
AT5G01990			Auxin efflux carrier family pr...		Potri.016G141700 [exp]	12.48	0.7716
AT2G16365			F-box family protein (.1.2.3.4...		Potri.009G118651 [exp]	13.03	0.7559
					Potri.001G142300 [exp]	14.45	0.7529

Compare expression of checked genes

Potri.002G160700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.