Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ATCYSC1.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61440 570 / 0 ATCYSC1, ARATH;BSAS3;1 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3) AT3G59760 395 / 4e-136 ATCS-C, OASC ARABIDOPSIS THALIANA CYSTEINSYNTHASE-C, O-acetylserine (thiol) lyase isoform C (.1), O-acetylserine (thiol) lyase isoform C (.2), O-acetylserine (thiol) lyase isoform C (.3) AT4G14880 388 / 8e-135 OLD3, CYTACS1, OASA1, ATCYS-3A ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) AT2G43750 383 / 8e-132 CPACS1, ATCS-B, OASB CHLOROPLAST O-ACETYLSERINE SULFHYDRYLASE 1, ARABIDOPSIS THALIANA CYSTEIN SYNTHASE-B, ARABIDOPSIS CYSTEINE SYNTHASE 1, O-acetylserine (thiol) lyase B (.1), O-acetylserine (thiol) lyase B (.2) AT3G22460 373 / 3e-129 OASA2 O-acetylserine (thiol) lyase (OAS-TL) isoform A2 (.1) AT3G04940 348 / 2e-119 ATCYSD1 cysteine synthase D1 (.1) AT5G28020 337 / 8e-115 ATCYSD2 cysteine synthase D2 (.1.2.3.4.5.6) AT5G28030 325 / 2e-110 DES1 L-cysteine desulfhydrase 1 (.1.2) AT3G03630 323 / 2e-108 CS26 cysteine synthase 26 (.1) AT1G55880 122 / 3e-31 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G086300 [exp] 654 / 0 AT3G61440 570 / 0.0 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3) Potri.013G127800 [exp] 395 / 1e-136 AT2G43750 516 / 0.0 CHLOROPLAST O-ACETYLSERINE SULFHYDRYLASE 1, ARABIDOPSIS THALIANA CYSTEIN SYNTHASE-B, ARABIDOPSIS CYSTEINE SYNTHASE 1, O-acetylserine (thiol) lyase B (.1), O-acetylserine (thiol) lyase B (.2) Potri.005G048700 [exp] 391 / 4e-136 AT4G14880 508 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.005G048400 [exp] 388 / 9e-135 AT4G14880 504 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.008G153300 [exp] 383 / 7e-133 AT4G14880 482 / 6e-173 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.005G048132 [exp] 380 / 2e-131 AT3G04940 402 / 5e-141 cysteine synthase D1 (.1) Potri.005G048066 [exp] 379 / 2e-131 AT3G04940 409 / 3e-144 cysteine synthase D1 (.1) Potri.013G035500 [exp] 379 / 2e-131 AT4G14880 509 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.013G035200 [exp] 375 / 7e-130 AT4G14880 423 / 2e-149 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014765 [exp] 593 / 0 AT3G61440 577 / 0.0 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3) Lus10036370 [exp] 483 / 3e-172 AT3G61440 471 / 8e-168 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3) Lus10015947 [exp] 390 / 1e-135 AT4G14880 509 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Lus10019003 [exp] 389 / 3e-135 AT4G14880 508 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Lus10027056 [exp] 379 / 2e-130 AT3G59760 533 / 0.0 ARABIDOPSIS THALIANA CYSTEINSYNTHASE-C, O-acetylserine (thiol) lyase isoform C (.1), O-acetylserine (thiol) lyase isoform C (.2), O-acetylserine (thiol) lyase isoform C (.3) Lus10025589 [exp] 379 / 2e-130 AT3G59760 536 / 0.0 ARABIDOPSIS THALIANA CYSTEINSYNTHASE-C, O-acetylserine (thiol) lyase isoform C (.1), O-acetylserine (thiol) lyase isoform C (.2), O-acetylserine (thiol) lyase isoform C (.3) Lus10019002 [exp] 375 / 6e-130 AT4G14880 461 / 2e-164 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Lus10020342 [exp] 327 / 5e-110 AT3G03630 455 / 8e-160 cysteine synthase 26 (.1) Lus10004118 [exp] 311 / 5e-105 AT3G04940 375 / 3e-131 cysteine synthase D1 (.1) Lus10009521 [exp] 301 / 2e-99 AT3G03630 432 / 2e-150 cysteine synthase 26 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00291 [poplar] [flax] PALP Pyridoxal-phosphate dependent enzyme
Representative CDS sequence Show only first row Show all	>Potri.002G160800.2 pacid=42778796 polypeptide=Potri.002G160800.2.p locus=Potri.002G160800 ID=Potri.002G160800.2.v4.1 annot-version=v4.1 ATGGCTGCTATAAGGAGCTTATTGAAGAAAAGTTCATCATCAATCCCAGCATGTAATGAGCTGATGATGGTTAGAAGATTGTTCTCTGCAGAAGCTGCTA CTGTTGCCTCTGCTTCTTTTGCTCAAAGACTCAGAGATCTGCCAAAAGATCTTCCCGGGACGAAAATCAAGACACGAGTTTCCCAACTCATTGGGAAAAC TCCACTTGTGTATCTTAACAAAGTGACTGAAGGATGTGGAGCTTATATAGCTGTCAAGCAAGAGATGTTTCAGCCCACTTCTAGCATCAAAGACAGACCG GCATTGGCAATGGTTGAAGAAGCTGAAAAAAAGAACTTGATTGCTCCTGGGAAGACGACTTTGATAGAGCCGACTTCTGGTAATATGGGGATAAGTATGG CATTTATGGCAGCCATGAAAGGATACAAGATGATACTAACCATGCCTTCTTATACTAGCTTGGAGAGAAGGGTGACTATGAGAGCATTTGGAGCTGAGCT AATTTTGACTGACCCCGCTAAGGGAATGGGAGGGACAGTTAAGAAGGCATATGAACTTTTGGAATCCACACCAAATGCTTTCATGCTTCAACAGTTCTCA AATCCTGCCAATACTCAGGTTCATTTTGAAACTACTGGCCCTGAAATATGGGAGGATACAGTAGGAAAAGTTGACATCTTTGTCATGGGAATAGGCAGTG GAGGGACTGTCTCTGGTGTCGGGCAGTATCTCAAGTCCCAAAATCCTAATGTTAAGATTTATGGAGTTGAGCCTGCTGAGAGTAATATACTGAATGGTGG CAAACCAGGTCCTCATCACATTACTGGCAATGGGGTTGGATTCAAGCCAGACATATTGGACATGGATGTAATGGAAAAGGTTCTGGAGGTTAGTAGCGAA GATGCTGTGAATATGGCTAGAAAGTTGGCATTGGAGGAGGGTCTTATGGTGGGAATTTCATCCGGAGCCAACACAGTTGCTGCACTTAGACTTGCTAGAA TGCCTGAGAATAAAGGCAAACTTATTGTGACTGTTCATGCAAGTTTTGGGGAGCGATACTTGTCATCTGTCCTGTTTCAAGAGTTGAGGAAAGAAGCTGA AAACATGCAGCCTGTTCCTGTGGACTAA
AA sequence Show only first row Show all	>Potri.002G160800.2 pacid=42778796 polypeptide=Potri.002G160800.2.p locus=Potri.002G160800 ID=Potri.002G160800.2.v4.1 annot-version=v4.1 MAAIRSLLKKSSSSIPACNELMMVRRLFSAEAATVASASFAQRLRDLPKDLPGTKIKTRVSQLIGKTPLVYLNKVTEGCGAYIAVKQEMFQPTSSIKDRP ALAMVEEAEKKNLIAPGKTTLIEPTSGNMGISMAFMAAMKGYKMILTMPSYTSLERRVTMRAFGAELILTDPAKGMGGTVKKAYELLESTPNAFMLQQFS NPANTQVHFETTGPEIWEDTVGKVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPAESNILNGGKPGPHHITGNGVGFKPDILDMDVMEKVLEVSSE DAVNMARKLALEEGLMVGISSGANTVAALRLARMPENKGKLIVTVHASFGERYLSSVLFQELRKEAENMQPVPVD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G61440		ATCYSC1, ARATH;...	BETA-SUBSTITUTED ALA SYNTHASE ...		Potri.002G160800 [exp]	0	1	Pt-ATCYSC1.3
AT5G67030		NPQ2, LOS6, IBS...	NON-PHOTOCHEMICAL QUENCHING 2,...		Potri.007G044300 [exp]	6.00	0.9330	Pt-ZEAEPOX.1
AT3G27110			Peptidase family M48 family pr...		Potri.001G330800 [exp]	15.09	0.9232
AT4G24010		CSLG2, ATCSLG1	ARABIDOPSIS THALIANA CELLULOSE...		Potri.003G142201 [exp]	18.16	0.9114
AT2G30950		FTSH2, VAR2	VARIEGATED 2, FtsH extracellul...		Potri.014G139500 [exp]	18.22	0.9133	Pt-VAR2.3
AT5G42270		FTSH5, VAR1	VARIEGATED 1, FtsH extracellul...		Potri.002G012000 [exp]	19.28	0.9224	FTSH2.2
AT1G05010		ACO4, EAT1, EFE	ethylene forming enzyme, ethyl...		Potri.004G003000 [exp]	23.55	0.8959	Pt-ACO1.2
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Potri.017G032500 [exp]	31.62	0.9023	ZOG1.12
AT4G37000		ATRCCR, ACD2	ARABIDOPSIS THALIANA RED CHLOR...		Potri.007G043700 [exp]	33.94	0.9101
AT5G11330			FAD/NAD(P)-binding oxidoreduct...		Potri.018G032500 [exp]	40.89	0.9021
AT2G16800			high-affinity nickel-transport...		Potri.009G135600 [exp]	48.43	0.8773

Compare expression of checked genes

Potri.002G160800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.