Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46020 2518 / 0 CHA2, ATBRM, CHR2, BRM CHROMATIN REMODELING 2, ARABIDOPSIS THALIANA BRAHMA, transcription regulatory protein SNF2, putative (.1.2) AT3G06010 482 / 5e-145 ATCHR12 Homeotic gene regulator (.1) AT5G19310 481 / 8e-145 Homeotic gene regulator (.1) AT2G28290 500 / 5e-143 CHR3, SYD SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT3G06400 363 / 6e-105 CHR11 chromatin-remodeling protein 11 (.1.2.3) AT5G18620 360 / 1e-103 CHR17 chromatin remodeling factor17 (.1.2) AT2G13370 346 / 4e-96 CHR5 chromatin remodeling 5 (.1) AT5G66750 301 / 1e-86 CHR01, CHA1, SOM1, CHR1, SOM4, DDM1, ATDDM1 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) AT2G25170 298 / 1e-81 CKH2, SSL2, GYM, CHD3, PKL, CHR6 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) AT4G31900 287 / 8e-79 PKR2 PICKLE RELATED 2, chromatin remodeling factor, putative (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G086500 [exp] 3625 / 0 AT2G46020 2483 / 0.0 CHROMATIN REMODELING 2, ARABIDOPSIS THALIANA BRAHMA, transcription regulatory protein SNF2, putative (.1.2) Potri.010G019150 [exp] 504 / 3e-144 AT2G28290 1501 / 0.0 SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.008G149900 [exp] 473 / 1e-141 AT3G06010 1485 / 0.0 Homeotic gene regulator (.1) Potri.008G195900 [exp] 495 / 2e-141 AT2G28290 1440 / 0.0 SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.010G091200 [exp] 470 / 2e-140 AT3G06010 1408 / 0.0 Homeotic gene regulator (.1) Potri.010G021400 [exp] 370 / 3e-107 AT3G06400 1748 / 0.0 chromatin-remodeling protein 11 (.1.2.3) Potri.008G205600 [exp] 358 / 4e-103 AT3G06400 1724 / 0.0 chromatin-remodeling protein 11 (.1.2.3) Potri.001G253400 [exp] 348 / 1e-96 AT2G13370 2206 / 0.0 chromatin remodeling 5 (.1) Potri.009G047800 [exp] 345 / 1e-95 AT2G13370 2129 / 0.0 chromatin remodeling 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036371 [exp] 2862 / 0 AT2G46020 2621 / 0.0 CHROMATIN REMODELING 2, ARABIDOPSIS THALIANA BRAHMA, transcription regulatory protein SNF2, putative (.1.2) Lus10014764 [exp] 1364 / 0 AT2G46020 1226 / 0.0 CHROMATIN REMODELING 2, ARABIDOPSIS THALIANA BRAHMA, transcription regulatory protein SNF2, putative (.1.2) Lus10034064 [exp] 466 / 3e-139 AT3G06010 1422 / 0.0 Homeotic gene regulator (.1) Lus10010522 [exp] 460 / 2e-137 AT3G06010 1358 / 0.0 Homeotic gene regulator (.1) Lus10012798 [exp] 466 / 3e-132 AT2G28290 1549 / 0.0 SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10033967 [exp] 355 / 1e-98 AT5G18620 1650 / 0.0 chromatin remodeling factor17 (.1.2) Lus10009711 [exp] 351 / 5e-98 AT2G13370 2115 / 0.0 chromatin remodeling 5 (.1) Lus10022423 [exp] 348 / 1e-96 AT2G13370 2250 / 0.0 chromatin remodeling 5 (.1) Lus10041735 [exp] 319 / 6e-92 AT5G66750 1069 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Lus10024019 [exp] 294 / 3e-83 AT5G66750 1034 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0023 [poplar] [flax] P-loop_NTPase PF04851 [poplar] [flax] ResIII Type III restriction enzyme, res subunit CL0023 [poplar] [flax] PF08880 [poplar] [flax] QLQ QLQ
Representative CDS sequence Show only first row Show all	>Potri.002G160900.5 pacid=42779345 polypeptide=Potri.002G160900.5.p locus=Potri.002G160900 ID=Potri.002G160900.5.v4.1 annot-version=v4.1 ATGCAATCCGGTGGTGGTGGAGGAGGTGGGCCCGGTCGGGTGGGACCGGCTGGGCGTGCGGGGTCCACTTCATCCGCTGCAGCATCACCTTCTTCTTCGT CTTCGTCTGCTGCTGTATGGAACCTTCAGTTGGGGTTCGATTCAGTACAGCAGCAGCAGCAGCAGCCTAGGCAGGCATTACAGCAACAATTACTTAGAAA ACCTGAAGGAAATGAAGCCCTTCTAGCTTATCAAGCTGGGGCTCTTCAAGGAGTTACGGTAGGGAACAATTTTGCTTCATCTCCAGGCTCAATGCAAACG CCTCAACAGTCCAGGCAATTTTTTGATTTGGCTCGACAACATGGTTCCTCTCAGGATGGACAGAATAGGAATCAAGGTGTTGAGCAACAGGCTTTGAACC CAATGCAACAGGCGTATCTTCAATATGCTTTCCAGGCCGCCCAACAAAAGTCGGCCTTGGCAATGCAGTCTCAGCAACAAGCTAAAATAGGAATGCTGGG CCCTACTGCTGGCAAGGATCAGGACATTCGGATGGGAAATTTGAAAATGCAGGAACTCATGTCCATGCAGGCGGCTAATCAGGCTCAGGCATCCTCTTCT AAGAACTCATCTGACCATTTTTCTCGTAGTGAAAAGCAGGTAGAACAAGGTCAGCACCTAGCCTCTGATCAGAGGAATGAGCAAAAGTCTCCACTCCAGC CTACTGCCACTGGACAACTAATGCCTGCAAATGTTACGAGGCCCATGCAGGCCCCACAAACCATCCAAAACATGGCAAACAACCATCTCGCAATGACTGC ACAGTTACAAGCAATTCAAGCATGGGCACTTGAGCGCAACATTGATCTGTCACAACCTGCAAATGTCAACTTGATGGCTCAGCTTATTCCATTCATGCAG GCAAGGATGGCTGCACAACTAAAGGCAAATGAAAGTAATCCTGGTGCGCAGTCATCACATCTCCTTGTGTCAAAGCCGCAGGTTGCCTCTCCATCCATTG CAAGTGAAAGTTCTCCTCGTGCTAATTCATCCAGTGATGTCTCTGGGCAGTCTGGCACTGCGAAAGCCAGGCAAACTGTTCCATCTGGTCCCTTTGGCTC AACTTCCAGTGGAGGCATGGTGAATAACCCTAGCAACCTCGCAATGCAGCAGCAGGCTTTTCACAGCAGAGAGAACCAAGCGCCTCCTCGACAGACAGCT GTGCTTGGCAATGGAATGCCTGCTAACACAGGCCAAGGTGTGGATCAGATTTTGCCTTCAAAAAATGCATTAAACAGCTCAGAAACTTCACAGGCACGGC AATTCAGGCAACTGAATCGATCTTCTCCACAATCTGCTGGTCCTTCTACTGAAGGAGGCTCGGGCAACCGCTTCTCTTCACAAGGTGGGCCAGCTGTTCA GATGGCACAACAGCGCACCGGGTTCACTAAACAGCAGTCACATGTTCTGAAAGCACAAATTCTAGCATTTAGGCGATTGAAGAAAGGAGAAGGTACTCTT CCACAAGAGCTTCTTCGAGCTATAGCCCCACCACCCCTTGAGCTGCAACTGCAGCAGCAACTTCTTCCCGCAGGAGGAAGTAATCAGGACAGGCCAGGTG GAAAGATACCTGAAGAACAAGCAAGTCATCCGGAGTCCAATGATAAGGATTTACAAGCAATGCCATCTATGAATGGACAGAATGTTTCTAAAGAGGAAGT TTTTACTGGCGATGAGAAAGCAGCTGTCTCAACCATTAATATGCAAAAGGCACCGGCTGTGATGAAGGAACCCATGCCCTTGGTGGCTTCTGGGAAGGAA GAGCAGCAAACTGCTACATTTTCTGTCAAGTCAGACCAGGAGAGTGAGCATGGACTTCAGAAAGCTCCTGTTATAAGTGATCTTGCATCAGATAGGGGAA AGGGTGTTGCACCACAGTTTCCTGCATCTGATGCTGCGCAAGCTAAGAAACCTGCACAAGTGAGCACTGTGCCCCAGACAAAAGATTCTGGCTCCACCAG AAAGTATCACGGACCATTATTTGATTTTCCTTTTTTTACTAGGAAACATGACTCTGTTGGGTCAACTGGGATAGTTAACACGAATAATAACCTAACATTG GCCTATGATGTCAAAGATCTTCTTTTTGAGGAAGGCGTGGAAATGCTTACCAGGAAAAGGTTAGAGAATTTGAAGAAAATCAATGGTCTCCTAGCAGTAA ATTTAGAGAGGAAAAGGATTAGGCCAGATCTTGTGTTGCGGTTACAGATTGAAGAGAAAAAGCTAAAGCTTCTAGATCTACAGGCGCGTTTAAGGGATGA AGTTGATCAGCAGCAACAGGAAATCATGGCAATGCCTGACAGGCTATACAGGAAGTTTGTTCGGCTATGTGAGCGTCAAAGGATGGAGCTGACGAGACAG GTACAGGCCTCTCAGAAAGCCATAAGAGAGAAGCAATTGAAATCCATCATGCAGTGGCGCAAGAAACTTCTTGAGTCTCATTGGGCCATCCGTGATTCAC GCACTGCCCGTAACAGAGGAGTTGCCAAATACCATGAGAGAATGTTGAGGGAATTTTCAAAGAGAAAGGATGATGACCGAAATAAAAGGATGGAGGCATT AAAGAACAATGATGTTGAAAGGTACAGAGAAATGTTGTTGGAGCAACAAACTAGCATTTCAGGCGATGCTTCTGAGAGATATGCTGTTCTCTCATCATTC TTGACCCAGACAGAAGAATATCTTCATAAGCTGGGTGGTAAAATAACAGCTACTAAGAATCAACAGGAAGTGGAGGAGGCAGCTAATGCTGCCGCCGCAG CTGCTCGACTGCAGGGCCTATCAGAAGAAGAAGTACGCGCAGCTGCAGCTTGTACTAGCGAGGAAGTAATGATAAGAAACCGGTTTATGGAAATGAATGC ACCCAGGGACAGTTCATCTGTTAACAACAGATATTACAATCTTGCCCATGCAGTGAATGAAAGGGTCATAAGGCAACCATCTATGTTACGAACAGGAACC TTACGAGACTATCAGCTTGTTGGATTGCAGTGGATGCTTTCTTTGTATAACAACAAATTAAATGGAATCTTGGCAGATGAGATGGGGCTTGGAAAGACTG TGCAGGTGATGGCACTGATTGCTTATCTAATGGAATTCAAAGGAAACTATGGACCGCATCTTATAATTGTTCCTAATGCTGTTTTGGTGAATTGGAAGAG CGAGCTGCACAGCTGGCTGCCATCTGTGTCCTGCATTTATTATGTTGGTGGAAAGGATCAGCGTGCAAAATTATTTTCCCAAGAGGTTTCTGCCATGAAA TTTAATGTTCTCGTGACAACTTACGAGTTTATCATGTATGATCGCACGAAACTTTCTAAACTTGATTGGAAGTACATCATAATTGACGAGGCACAGAGAA TGAAGGACAGGGAATCAGTTTTAGCCCGTGATCTTGATAGATATCGCTGCCAGAGGCGCTTACTTCTCACAGGGACACCATTACAGAATGACTTGAAGGA GCTATGGTCGCTACTGAATTTACTTCTACCAGAAGTTTTTGATAATCGTAAAGCATTTCATGATTGGTTCTCGAAGCCCTTTCAAAGGGAAGCCCCTGTG CATGATGGAGAGGATGACTGGCTTGAGACTGAAAAGAAGGTTATCATAATTCATCGACTTCATCAAATTTTAGAGCCTTTTATGCTCAGACGTCGTGTGG AAGATGTGGAAGGTTCACTTCCACCCAAGGTTTCCATTGTCTTGAGATGTAGAATGTCTGCTATACAGAGTACAATTTATGATTGGATCAAATCTACTGG CACTATCCGAGTTGACCCTGAGGATGAGAAGCGCAGGGTTCAAAAAAATCCAGCATACCAGGCTAAGGTGTATAGAACTTTAAATAACAGATGTATGGAG CTCCGAAAAACTTGCAATCATCCTTTGCTTAATTACCCGTATTTTAACGACTTATCCAAGGATTTCCTTGTTAAATCTTGTGGAAAACTTTGGGTTCTGG ATAGGATTCTCATAAAACTTCAAAGAACAGGCCATCGGGTGCTACTCTTTAGCACCATGACAAAACTCCTTGATATATTAGAGGAATACTTGCAATGGCG CCGACTGGTGTACAGAAGGATCGATGGAACAACTAGCCTTGAAGATCGTGAATCAGCTATTGTGGACTTTAATAGCCCTGGTTCAGACTGCTTTATTTTC TTGCTTAGTATTCGTGCAGCTGGAAGGGGTCTTAATCTGCAGTCTGCTGACACAGTTGTCATATATGATCCTGATCCGAATCCTAAGAATGAGGAACAGG CAGTTGCTAGAGCCCACCGGATTGGACAGACAAGAGAAGTCAAAGTCATTTATATGGAAGCAGTTGTTAACAAAATTTCTAGCTGTCAAAAGGAGGATGA ATTAAGAAGCGGAGGTACAGTTGATCTAGAAGATGACCTTGTTGGCAAGGATCGATATATGGGTTCTATTGAGAGCCTTATAAGGAACAATATCCAGCAA TACAAGATTGACATGGCTGATGAGGTTATCAATGCTGGGCGTTTTGACCAAAGAACAACACACGAGGAAAGGCGGATGACTTTAGAGACATTATTGCATG ACGAAGAGCGATATCAAGAAACTTTGCATGATGTTCCATCACTCCAAGAGGTAAATCGCATGATAGCCAGGAGTGAAGATGAAGTTGAGTTATTTGATCA AATGGATGAAGAATTTGATTGGATCGAGGAGATGACGAGGTATGACCAGGTACCCAAGTGGCTTCGAGCCAGTACAAAAGAAGTGGATGCTACTATTGCT GTCTTATCGAAGAAACCATCAAAAGCGATCCTTTTTGCTGATGGTATGGGTATGGCATCCGGTGAAATGGAAACTGAAAGAAAAAGGGGGCGGCCGAAAG GGAAAAAGTCTCCTAATTACAAGGAAATTGATGAAGAAACTGGAGACTATTCTGAGGCAAGTTCTGATGAGAGAAATGGTTATTCTGCACATGAAGAAGA GGGAGAAATTAGAGAATTTGAAGATGATGAATCCAGTGATGCTGTTGGGGCACCACCTGTTAATAAGGACCAATCAGAAGATGATGGTCCAGCATGTGAT GGGGGCTACGAGTATCACCAAGCTGTGGAAAGCACTAGAAATGATCATGCACTAGACGAAGCTGGCTCCTCAGGGTCATCCTCTGACAGCCAAAGAATGA CACGAATGATCTCTCCTGTTTCTCCTCAGAAATTCGGGTCTCTTTCTGCTTTAGAAGCTAGACCAGGTTCACTTTCCAAGAAGCTGCCAGATGAATTAGA AGAGGGGGAAATTGCGGTGTCTGGAGATTCTCACATGGATCACCAGCAATCAGGAAGTTGGATACATGATCGTGATGAAGGTGAAGATGAACAGGTTCTA CAACCTAAAATAAAACGAAAACGTAGTATTCGGCTTCGACCTCGCCTCACTGTTGAAAAGCCAGAGGAGAAGTCTAGCAATGATGTGCAACGTGGAGATT CTTTTCTGTTGCCATTCCAAGTGGATAATAAATATCAAGCACAGTTGAAGAGTGATACTGAAATGAAAGCATTAGTAGAGCCCAGTGGATTCAAGCATGA TCAGAGTGATTCCTCAAGAAGTAGACGAAATCTACCTTCAAGAAGAATAGCCAAAACATCTAAGTTGCGGGCTTCACCAAAATCTAGCAGATTGAATTTG CAGTCTGCTCCAGCAGAGGATGCTGCTGAACACTCTAGAGAGAGCTGGGATGGTAAAGTTCCAAGTACAAGTGGTGCTTCAACATTGGGCAAGATGTCTG ATGTCATCCAGAGAAGGTGTAAAAATGTTATTAGCAAGTTTCAAAGGAGAATAGACAAGGAAGGGCAACAAATTGTACCTCTTCTAGCTGATTTGTGGAA GAGGATTGAAAATCCTGGTTACATAAGTGGTGCTGGAACTAATCTTTTGGATTTACGTAAGATTGAACAGCGTGTTGACAGATTGGAGTATAGTGGAGTA ATGGAGCTCGTGTTCGACGTGCAATTCATGTTAAAAGGTGCAATGCAATTTTATGGGTTCTCGCATGAGGTTAGAACTGAAGCAAGAAAGGTGCATGATC TCTTTTTTGATATCTTGAAGATTGCGTTTCCAGACACAGATTTCCGAGAGGCGAGGGATACTTTCTCTTTCTCTGGTCCATCATCAACTTCCATTTCAGC TCCATCTCCAAAACAAGCTGCTCTTGGTCTAATCAAGAGACACAAGTCAATAAATGATGTAGAACCTGACAACAGCACTACCCATAAGCCAATGCAGCGA GGATCCATTCCTACTGGTGACGACACAAGGAGGGTCCATGTGCCCCAGAAGGAAACAAGGCTTGGGAGTGGAAGTGGCAGTAGTCGAGAACAATATCCGC AGGATGATTCTCCACTGCATCCAGGGGAGTTGGTTATCTGCAAGAAGAAGAGGAAAGACCGGGACAAGTCAGTTGTGAGGTCAAGAACTGGATCAAGTGG TCCAGTTTCCCCCCCTAGCATGGGCCGTAATATCACAAGTCCCATTTTGAGTTCAATCCCTAAAGATGCGAGACCGAACCAGCAGAATACCCATCAGCAA GGGTGGGTGAGTCAACCTCAACCAACAAATGGTGGTGCGGGGAGTGTTGGTTGGGCAAATCCTGTAAAGAGGTTGAGGACAGATGCTGGTAAAAGGCGGC CAAGCCATTTATGA
AA sequence Show only first row Show all	>Potri.002G160900.5 pacid=42779345 polypeptide=Potri.002G160900.5.p locus=Potri.002G160900 ID=Potri.002G160900.5.v4.1 annot-version=v4.1 MQSGGGGGGGPGRVGPAGRAGSTSSAAASPSSSSSSAAVWNLQLGFDSVQQQQQQPRQALQQQLLRKPEGNEALLAYQAGALQGVTVGNNFASSPGSMQT PQQSRQFFDLARQHGSSQDGQNRNQGVEQQALNPMQQAYLQYAFQAAQQKSALAMQSQQQAKIGMLGPTAGKDQDIRMGNLKMQELMSMQAANQAQASSS KNSSDHFSRSEKQVEQGQHLASDQRNEQKSPLQPTATGQLMPANVTRPMQAPQTIQNMANNHLAMTAQLQAIQAWALERNIDLSQPANVNLMAQLIPFMQ ARMAAQLKANESNPGAQSSHLLVSKPQVASPSIASESSPRANSSSDVSGQSGTAKARQTVPSGPFGSTSSGGMVNNPSNLAMQQQAFHSRENQAPPRQTA VLGNGMPANTGQGVDQILPSKNALNSSETSQARQFRQLNRSSPQSAGPSTEGGSGNRFSSQGGPAVQMAQQRTGFTKQQSHVLKAQILAFRRLKKGEGTL PQELLRAIAPPPLELQLQQQLLPAGGSNQDRPGGKIPEEQASHPESNDKDLQAMPSMNGQNVSKEEVFTGDEKAAVSTINMQKAPAVMKEPMPLVASGKE EQQTATFSVKSDQESEHGLQKAPVISDLASDRGKGVAPQFPASDAAQAKKPAQVSTVPQTKDSGSTRKYHGPLFDFPFFTRKHDSVGSTGIVNTNNNLTL AYDVKDLLFEEGVEMLTRKRLENLKKINGLLAVNLERKRIRPDLVLRLQIEEKKLKLLDLQARLRDEVDQQQQEIMAMPDRLYRKFVRLCERQRMELTRQ VQASQKAIREKQLKSIMQWRKKLLESHWAIRDSRTARNRGVAKYHERMLREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSISGDASERYAVLSSF LTQTEEYLHKLGGKITATKNQQEVEEAANAAAAAARLQGLSEEEVRAAAACTSEEVMIRNRFMEMNAPRDSSSVNNRYYNLAHAVNERVIRQPSMLRTGT LRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHSWLPSVSCIYYVGGKDQRAKLFSQEVSAMK FNVLVTTYEFIMYDRTKLSKLDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSKPFQREAPV HDGEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSTIYDWIKSTGTIRVDPEDEKRRVQKNPAYQAKVYRTLNNRCME LRKTCNHPLLNYPYFNDLSKDFLVKSCGKLWVLDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNSPGSDCFIF LLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQTREVKVIYMEAVVNKISSCQKEDELRSGGTVDLEDDLVGKDRYMGSIESLIRNNIQQ YKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETLHDVPSLQEVNRMIARSEDEVELFDQMDEEFDWIEEMTRYDQVPKWLRASTKEVDATIA VLSKKPSKAILFADGMGMASGEMETERKRGRPKGKKSPNYKEIDEETGDYSEASSDERNGYSAHEEEGEIREFEDDESSDAVGAPPVNKDQSEDDGPACD GGYEYHQAVESTRNDHALDEAGSSGSSSDSQRMTRMISPVSPQKFGSLSALEARPGSLSKKLPDELEEGEIAVSGDSHMDHQQSGSWIHDRDEGEDEQVL QPKIKRKRSIRLRPRLTVEKPEEKSSNDVQRGDSFLLPFQVDNKYQAQLKSDTEMKALVEPSGFKHDQSDSSRSRRNLPSRRIAKTSKLRASPKSSRLNL QSAPAEDAAEHSRESWDGKVPSTSGASTLGKMSDVIQRRCKNVISKFQRRIDKEGQQIVPLLADLWKRIENPGYISGAGTNLLDLRKIEQRVDRLEYSGV MELVFDVQFMLKGAMQFYGFSHEVRTEARKVHDLFFDILKIAFPDTDFREARDTFSFSGPSSTSISAPSPKQAALGLIKRHKSINDVEPDNSTTHKPMQR GSIPTGDDTRRVHVPQKETRLGSGSGSSREQYPQDDSPLHPGELVICKKKRKDRDKSVVRSRTGSSGPVSPPSMGRNITSPILSSIPKDARPNQQNTHQQ GWVSQPQPTNGGAGSVGWANPVKRLRTDAGKRRPSHL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G46020		CHA2, ATBRM, CH...	CHROMATIN REMODELING 2, ARABID...		Potri.002G160900 [exp]	0	1
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Potri.007G003400 [exp]	1.41	0.9271	HAC901,Pt-HAC1.4
AT3G22380		TIC	time for coffee (.1.2)		Potri.008G151200 [exp]	2.44	0.9002
AT4G09980		EMB1691	EMBRYO DEFECTIVE 1691, Methylt...		Potri.012G144400 [exp]	2.44	0.9172
AT3G57300		ATINO80	INO80 ortholog (.1.2)		Potri.006G047100 [exp]	3.00	0.9155
AT2G27170		SMC3, TTN7	TITAN7, STRUCTURAL MAINTENANCE...		Potri.009G155200 [exp]	4.47	0.9146	TTN8.2
AT3G24870			Helicase/SANT-associated, DNA ...		Potri.014G189900 [exp]	4.89	0.8918
AT1G28420	HD	HB-1	homeobox-1 (.1)		Potri.011G057700 [exp]	5.47	0.8906
AT5G53430		SET29, ATX5, SD...	SET domain group 29 (.1)		Potri.015G014300 [exp]	5.83	0.8804	SDG29.1
AT3G48050		SUO	'shuttle' in chinese, BAH doma...		Potri.015G072900 [exp]	6.00	0.8845
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Potri.005G224900 [exp]	6.70	0.9123	CPC902,TTN8.3

Compare expression of checked genes

Potri.002G160900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.