Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00350 657 / 0 MATE efflux family protein (.1) AT4G25640 543 / 0 FFT, ATDTX35 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) AT1G47530 466 / 8e-163 MATE efflux family protein (.1) AT3G26590 429 / 4e-148 MATE efflux family protein (.1) AT5G38030 428 / 1e-147 MATE efflux family protein (.1) AT1G23300 427 / 9e-147 MATE efflux family protein (.1) AT1G12950 424 / 1e-145 RSH2 root hair specific 2 (.1) AT1G11670 384 / 2e-130 MATE efflux family protein (.1) AT3G21690 382 / 3e-129 MATE efflux family protein (.1) AT1G61890 380 / 6e-129 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G144900 [exp] 537 / 0 AT4G25640 574 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Potri.015G147600 [exp] 536 / 0 AT4G25640 523 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Potri.019G063500 [exp] 439 / 2e-151 AT3G26590 681 / 0.0 MATE efflux family protein (.1) Potri.008G187100 [exp] 415 / 2e-142 AT3G26590 661 / 0.0 MATE efflux family protein (.1) Potri.002G102100 [exp] 399 / 2e-136 AT5G65380 636 / 0.0 MATE efflux family protein (.1) Potri.011G002800 [exp] 399 / 6e-136 AT3G21690 656 / 0.0 MATE efflux family protein (.1) Potri.013G069700 [exp] 398 / 6e-136 AT1G33110 655 / 0.0 MATE efflux family protein (.1.2) Potri.007G010200 [exp] 391 / 3e-133 AT5G65380 696 / 0.0 MATE efflux family protein (.1) Potri.014G153100 [exp] 384 / 3e-130 AT3G21690 704 / 0.0 MATE efflux family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036374 [exp] 647 / 0 AT4G00350 749 / 0.0 MATE efflux family protein (.1) Lus10027504 [exp] 602 / 0 AT4G25640 683 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Lus10039263 [exp] 600 / 0 AT4G25640 691 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Lus10014760 [exp] 599 / 0 AT4G00350 703 / 0.0 MATE efflux family protein (.1) Lus10038850 [exp] 575 / 0 AT4G25640 685 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Lus10042130 [exp] 445 / 3e-154 AT1G47530 704 / 0.0 MATE efflux family protein (.1) Lus10010035 [exp] 436 / 4e-151 AT1G47530 665 / 0.0 MATE efflux family protein (.1) Lus10036854 [exp] 428 / 2e-147 AT3G26590 666 / 0.0 MATE efflux family protein (.1) Lus10006206 [exp] 427 / 5e-147 AT3G26590 664 / 0.0 MATE efflux family protein (.1) Lus10006205 [exp] 424 / 5e-146 AT3G26590 686 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [poplar] [flax] MviN_MATE PF01554 [poplar] [flax] MatE MatE
Representative CDS sequence Show only first row Show all	>Potri.002G161200.2 pacid=42778552 polypeptide=Potri.002G161200.2.p locus=Potri.002G161200 ID=Potri.002G161200.2.v4.1 annot-version=v4.1 ATGCAGCTTGGTATGGGCAGTGCTCTTGAAACGCTATGTGGACAAGCATTTGGAGCAGGGCAAGTAAATTTACTTGGAGTGTACATGCAAAGATCATGGA TAATTCTGTTTGTTGCTTGCTTATTCTTGTTGCCGCTGTATGTATTTGCTACTCCAGTACTAAAACTGCTTGGACAACGAAAAGATATCGCAGAACTTGC TGGAAAATTTACTATTCAAGTTATCCCTCAAATGTTCTCGTTAGCCATCAATTTCCCTACTCAAAAGTTCCTGCAGGCACAAAGCAAGGTTGGAGTTTTG GCATGGATTGGCCTTGCAGCTTTGATCATACACATTGGGGTGCTTTATCTCTTCATAAACGTATTCAAGTGGGGTTTGGCTGGTGCTGCCATTGCTTATG ACATCTCATCTTGGGGCATTGCTTTGGCTCAGTTAGCTTATGTGGTTGGTTGGTGCAAGGACGGATGGAAAGGATTGTCTTGGTTAGCCTTTAAGGACAT TTGGGCTTTTGTTCGGCTCTCCATAGCTTCAGCTGTGATGCTTTGCCTGGAGATTTGGTATTTTATGACCATAATTGTTCTTACTGGACACCTTGAAGAT CCTATCATCGCAGTTGGGTCCCTTTCTATCTGCATGAACATCAATGGTTGGGAAGGCATGTTGTTTATTGGAATCAATGCAGCTATAAGTGTTCGAGTTT CTAATGAGCTAGGATCAGGCCATCCGAGAGCTGCAAAATACGCTGTCATTGTCACATGCATTGAGTCTCTCCTTATTGGGATCCTTTGTGCAGTGATTAT TCTGGCAACTAGGAACCATTTTGCTATAATTTTTACTGCTAGCGAAGAGATGAGAAAAGCGGTGGCCAATTTAGCATACCTTCTTGGTATAACCATGATC TTAAATAGCATTCAGCCAGTAATCTCAGGTGTTGCTGTGGGAGGTGGCTGGCAAGCCTTGGTGGCTTATATAAACTTGTTTTGTTATTACGTTGTCGGCC TTCCTCTAGGGTTTCTTCTTGGTTACAAAACAAAATTGCATGTCAAGGGAATTTGGATAGGCATGATTATTGGGACTTGCCTGCAGACATTGATCCTTGT TTTTATTGTTTATAAAACCAACTGGAACAAGGAGGTTGAACAAGCTTCTGAACGAATGCGAAAATGGGGTGGACAAGAAGAGCAACAACTATCCGGCGAT TCGAATCAAATCAACATTTTGACCACTTAA
AA sequence Show only first row Show all	>Potri.002G161200.2 pacid=42778552 polypeptide=Potri.002G161200.2.p locus=Potri.002G161200 ID=Potri.002G161200.2.v4.1 annot-version=v4.1 MQLGMGSALETLCGQAFGAGQVNLLGVYMQRSWIILFVACLFLLPLYVFATPVLKLLGQRKDIAELAGKFTIQVIPQMFSLAINFPTQKFLQAQSKVGVL AWIGLAALIIHIGVLYLFINVFKWGLAGAAIAYDISSWGIALAQLAYVVGWCKDGWKGLSWLAFKDIWAFVRLSIASAVMLCLEIWYFMTIIVLTGHLED PIIAVGSLSICMNINGWEGMLFIGINAAISVRVSNELGSGHPRAAKYAVIVTCIESLLIGILCAVIILATRNHFAIIFTASEEMRKAVANLAYLLGITMI LNSIQPVISGVAVGGGWQALVAYINLFCYYVVGLPLGFLLGYKTKLHVKGIWIGMIIGTCLQTLILVFIVYKTNWNKEVEQASERMRKWGGQEEQQLSGD SNQINILTT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00350			MATE efflux family protein (.1...		Potri.002G161200 [exp]	0	1
					Potri.018G041650 [exp]	36.11	0.6019
AT3G12530		PSF2	PSF2 (.1.2)		Potri.008G056200 [exp]	56.14	0.6726
AT3G55430			O-Glycosyl hydrolases family 1...		Potri.010G203800 [exp]	68.55	0.6415
					Potri.010G194650 [exp]	75.45	0.6570
					Potri.001G129500 [exp]	84.24	0.6431
					Potri.005G097250 [exp]	84.58	0.6418
AT4G25810		XTH23, XTR6	xyloglucan endotransglucosylas...		Potri.005G007200 [exp]	153.50	0.6083	EXT.9
AT5G26680			5'-3' exonuclease family prote...		Potri.013G000700 [exp]	196.21	0.6083

Compare expression of checked genes

Potri.002G161200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.