Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00335 159 / 1e-48 RHB1A RING-H2 finger B1A (.1.2.3) AT5G41350 115 / 9e-32 RING/U-box superfamily protein (.1) AT4G23450 69 / 2e-14 AIRP1, AtAIRP1 ABA Insensitive RING Protein 1, RING/U-box superfamily protein (.1.2.3) AT5G38895 69 / 4e-14 RING/U-box superfamily protein (.1.2.3) AT3G02290 66 / 8e-13 RING/U-box superfamily protein (.1.2) AT5G15790 64 / 3e-12 RING/U-box superfamily protein (.1.2) AT5G22000 50 / 5e-07 RHF2A, CIC7E11 RING-H2 group F2A (.1.2.3) AT4G14220 50 / 6e-07 RHF1A RING-H2 group F1A (.1) AT4G12190 41 / 5e-05 RING/U-box superfamily protein (.1) AT4G05350 42 / 0.0001 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G087000 [exp] 257 / 1e-86 AT4G00335 222 / 2e-73 RING-H2 finger B1A (.1.2.3) Potri.001G101700 [exp] 130 / 1e-37 AT5G41350 142 / 2e-42 RING/U-box superfamily protein (.1) Potri.003G129900 [exp] 125 / 3e-35 AT5G41350 146 / 6e-44 RING/U-box superfamily protein (.1) Potri.010G140300 [exp] 69 / 8e-14 AT5G38895 129 / 4e-37 RING/U-box superfamily protein (.1.2.3) Potri.004G114800 [exp] 69 / 9e-14 AT5G15790 246 / 6e-83 RING/U-box superfamily protein (.1.2) Potri.017G100100 [exp] 64 / 6e-12 AT5G15790 230 / 6e-76 RING/U-box superfamily protein (.1.2) Potri.003G161600 [exp] 64 / 6e-12 AT5G15790 167 / 2e-51 RING/U-box superfamily protein (.1.2) Potri.001G068700 [exp] 62 / 2e-11 AT5G38895 161 / 1e-49 RING/U-box superfamily protein (.1.2.3) Potri.016G066400 [exp] 51 / 2e-07 AT5G22000 386 / 4e-133 RING-H2 group F2A (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017788 [exp] 201 / 4e-65 AT4G00335 204 / 3e-67 RING-H2 finger B1A (.1.2.3) Lus10032270 [exp] 104 / 6e-27 AT5G41350 192 / 2e-61 RING/U-box superfamily protein (.1) Lus10024635 [exp] 100 / 3e-26 AT5G41350 178 / 7e-57 RING/U-box superfamily protein (.1) Lus10034367 [exp] 73 / 2e-15 AT5G38895 215 / 2e-70 RING/U-box superfamily protein (.1.2.3) Lus10005084 [exp] 66 / 1e-12 AT5G38895 224 / 8e-75 RING/U-box superfamily protein (.1.2.3) Lus10004636 [exp] 56 / 1e-09 AT5G41350 74 / 3e-17 RING/U-box superfamily protein (.1) Lus10016195 [exp] 51 / 2e-07 AT5G22000 276 / 2e-91 RING-H2 group F2A (.1.2.3) Lus10029351 [exp] 51 / 2e-07 AT5G22000 270 / 7e-89 RING-H2 group F2A (.1.2.3) Lus10008447 [exp] 48 / 2e-06 AT5G22000 397 / 4e-137 RING-H2 group F2A (.1.2.3) Lus10013374 [exp] 48 / 3e-06 AT5G22000 397 / 7e-137 RING-H2 group F2A (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.002G161500.3 pacid=42778751 polypeptide=Potri.002G161500.3.p locus=Potri.002G161500 ID=Potri.002G161500.3.v4.1 annot-version=v4.1 ATGGGAGGTTGCTGTTGTTCTTCAAGGAAACCTCATTTAAACGGAACGCCCGTTTATTATTATTGTCCGCCAGCTTTGGAAGAGCATGTCTCCTTAACAT CTCACAATGTTGCAGCCTCTGCATTCACTGCAGGTCTCCTTGTTGAATTGAATTTGAATACATCAACGCCTGATACTTTCCGCCCCCCTCCTGTGCCTCT GCCATATGATGTGGTTTTGGGATGTCCACAATCACCAGATTCTGAGTCTGTTAGGGAAATAATTAGTCGCAGTAGTTTTGAAACTTTGGCAACATGTGAA GATCTTGAAGAATTGGACTGCAAAACTCATGCTAGTTCATTTCTTTTCTCCCCAAGGAAGTCAGACGTGAAAAAATTCCATGAACCTGTTGCATCAGCAA CAGAAGAAGATGCTTGTCCGATATGCCTTGAAGGTGTGGTGGTGCCTTTTCTCATACGAGATAAATGCTGTTTTCAATTTATGTTTTTACAGTTTTTCTG GATAAAGAGAAGTAAATCAAGGTCTCCTGAATTGATGTGTAGTTGTCCAAAAGTAATTAGTCAGCTTTGTCTGCTTGCATTTGCAGAGTATGACTTGGAG AATCCAAAACACATCACGAAATGCGAACATCATTTTCACCTTTCCTGCATTCTAGAGTGGATGGAAAGGAGTGACATCTGCCCCATATGTGACCAGGAAG TAATAATTGACCACACCTACAATTAG
AA sequence Show only first row Show all	>Potri.002G161500.3 pacid=42778751 polypeptide=Potri.002G161500.3.p locus=Potri.002G161500 ID=Potri.002G161500.3.v4.1 annot-version=v4.1 MGGCCCSSRKPHLNGTPVYYYCPPALEEHVSLTSHNVAASAFTAGLLVELNLNTSTPDTFRPPPVPLPYDVVLGCPQSPDSESVREIISRSSFETLATCE DLEELDCKTHASSFLFSPRKSDVKKFHEPVASATEEDACPICLEGVVVPFLIRDKCCFQFMFLQFFWIKRSKSRSPELMCSCPKVISQLCLLAFAEYDLE NPKHITKCEHHFHLSCILEWMERSDICPICDQEVIIDHTYN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00335		RHB1A	RING-H2 finger B1A (.1.2.3)		Potri.002G161500 [exp]	0	1
AT4G39680			SAP domain-containing protein ...		Potri.005G080500 [exp]	2.82	0.8582
AT5G15270			RNA-binding KH domain-containi...		Potri.010G167100 [exp]	10.58	0.7809
AT1G11900			Tetratricopeptide repeat (TPR)...		Potri.001G273100 [exp]	12.00	0.8204
AT1G80880			Tetratricopeptide repeat (TPR)...		Potri.001G043500 [exp]	14.14	0.8081
AT1G72390			unknown protein		Potri.001G165800 [exp]	14.96	0.8273
AT1G48520		GATB	GLU-ADT subunit B (.1.2.3)		Potri.010G064700 [exp]	15.09	0.7778
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Potri.016G079200 [exp]	15.90	0.7923
AT4G29860		EMB2757, TAN	TANMEI, EMBRYO DEFECTIVE 2757,...		Potri.009G002100 [exp]	16.12	0.7903
AT5G56310			Pentatricopeptide repeat (PPR)...		Potri.003G223900 [exp]	16.94	0.8013
AT1G74900		OTP43	organelle transcript processin...		Potri.015G070200 [exp]	17.14	0.8052

Compare expression of checked genes

Potri.002G161500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.