Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00330 478 / 4e-168 CRCK2 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) AT5G58940 383 / 1e-129 CRCK1 calmodulin-binding receptor-like cytoplasmic kinase 1 (.1) AT2G11520 330 / 2e-108 CRCK3 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) AT1G06840 228 / 5e-66 Leucine-rich repeat protein kinase family protein (.1) AT1G30570 226 / 7e-66 HERK2 hercules receptor kinase 2 (.1) AT1G70460 223 / 9e-66 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT1G10620 222 / 2e-65 AtPERK11 proline-rich extensin-like receptor kinase 11, Protein kinase superfamily protein (.1) AT1G79620 225 / 3e-65 Leucine-rich repeat protein kinase family protein (.1) AT3G58690 212 / 2e-64 Protein kinase superfamily protein (.1) AT3G46290 221 / 4e-64 HERK1 hercules receptor kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G087200 [exp] 736 / 0 AT4G00330 488 / 7e-172 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Potri.009G041900 [exp] 419 / 3e-144 AT5G58940 412 / 3e-141 calmodulin-binding receptor-like cytoplasmic kinase 1 (.1) Potri.018G124600 [exp] 357 / 3e-119 AT2G11520 502 / 6e-175 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Potri.006G064200 [exp] 355 / 3e-118 AT2G11520 508 / 2e-177 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Potri.001G434200 [exp] 227 / 6e-74 AT4G00330 136 / 8e-40 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Potri.006G114400 [exp] 241 / 5e-71 AT1G79620 1295 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G096400 [exp] 231 / 5e-71 AT3G51550 451 / 6e-151 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.016G144100 [exp] 240 / 1e-70 AT1G79620 1380 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G204000 [exp] 224 / 3e-69 AT1G52540 427 / 7e-150 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036376 [exp] 558 / 0 AT4G00330 474 / 1e-166 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Lus10014760 [exp] 550 / 0 AT4G00350 703 / 0.0 MATE efflux family protein (.1) Lus10018828 [exp] 542 / 0 AT4G00330 471 / 2e-165 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Lus10017787 [exp] 537 / 0 AT4G00330 471 / 1e-163 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Lus10040704 [exp] 411 / 4e-141 AT5G58940 418 / 3e-143 calmodulin-binding receptor-like cytoplasmic kinase 1 (.1) Lus10018203 [exp] 410 / 5e-134 AT3G46980 689 / 0.0 phosphate transporter 4;3 (.1.2.3) Lus10041796 [exp] 342 / 5e-115 AT2G11520 498 / 2e-175 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Lus10028613 [exp] 342 / 6e-113 AT2G11520 540 / 0.0 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Lus10018913 [exp] 331 / 3e-108 AT2G11520 520 / 0.0 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Lus10028347 [exp] 291 / 8e-94 AT2G11520 435 / 3e-149 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.002G161600.2 pacid=42777258 polypeptide=Potri.002G161600.2.p locus=Potri.002G161600 ID=Potri.002G161600.2.v4.1 annot-version=v4.1 ATGAAAAGCCCATGTTCTCCCTACGTTCGCCGGACCCCAGCCTCTGGCGTACGGTCTACGTCGGAACGTATTCCTTACTCCCCTACATCCTCCTCCTACT CAGGCAGCTCCGCCGTGAAGAAGCGGGACCCATTGTTTGCGGTAGCGAAATCGGTGGCCGGAGTGTTTGGTGCTTGTTTAATGCCCCCCGAGCCTGAGCC GAACGATTCAAAGGCCTTTGGTTCCTCTGAAGAGTTAAAAGCTCCCTCTGTTGTATCCAATACTTCTGGGAGCAGTGAAAGAAGGCAAGGTTCAAATCGA GGCATTTATAGCAGTCCGTTCAATTCAGTCCGTGAGAGAGAACCTGGGAGTGTAAATTTTACCATGGAGGAAATATATACAGCCACAAGGAACTTCTCCC CGACGTTCAAGATTGGACAAGGTGATTTTGGGACTGTTTACAAGGGGAGACTCCAAGATGGAACCGCTGTTGCCATCAAACGTGCCAAGAAGAGTGTAAA TGACAAGCATTTAGGTGAAGAATTTCAAAGTGAGATTCGAACACTGGCACAGGTGGAACATTTACATCTAGTAAAGTTCTATGGTTATTTGGAACATGAA GATGAAAGAATTGTTCTTATGGAGTATGTTCCCAATGGAACTCTCAGAGAACACTTGGATTGCATGCATGGAAATGTTATTGACCTTGCTGTGCGCGTAG ATATTGCAATTGATGTAGCTCATGCAGTCACCTACCTTCACATGTACACAGATCACCCAATTATTCACAGGGACATAAAGTCCTCCAACATTCTCCTCAC AGAAAACTTTCGAGCCAAGGTAGCAGATTTTGGTTTTGCTAGACTGGCAGCTGACAGGGATTCAGGTGCCACCCATGTGTCTACCCAAGTTAAAGGAACT GCTGGATACTTGGACCCAGAATACATGAGGACGTATCAATTAACTGAGAAGAGCGATGTTTATTCATTTGGTGTGTTGCTGGTTGAACTAATGACAGGTA GGCGTCCTGTTGAACCGGAAAGGGAAATAAAGGAACGTTTAACTGCAAAATGGGCAATAAAGAAGTTTGCAGAAGGTAATGCCATTGTAATCTTGGACCC GAAGCTAGAGCGAACTGCTGCAAATAACTTGGCCCTAGAAAAGATTCTGGAACTAGCATTGCAATGTTTGGCTCCTGGCAGACAGAGCAGGCCGAGCATG AGGAAATGCGCAGAGGTTCTTTGGAGCATTCGTAAGGATTACAAGGAACAATCAACCTCAGATTTTTGTTATCTTATTTCTTCTAAATCACAGGGGAGTT TTTCAGTTATAACAGAAGAATAA
AA sequence Show only first row Show all	>Potri.002G161600.2 pacid=42777258 polypeptide=Potri.002G161600.2.p locus=Potri.002G161600 ID=Potri.002G161600.2.v4.1 annot-version=v4.1 MKSPCSPYVRRTPASGVRSTSERIPYSPTSSSYSGSSAVKKRDPLFAVAKSVAGVFGACLMPPEPEPNDSKAFGSSEELKAPSVVSNTSGSSERRQGSNR GIYSSPFNSVREREPGSVNFTMEEIYTATRNFSPTFKIGQGDFGTVYKGRLQDGTAVAIKRAKKSVNDKHLGEEFQSEIRTLAQVEHLHLVKFYGYLEHE DERIVLMEYVPNGTLREHLDCMHGNVIDLAVRVDIAIDVAHAVTYLHMYTDHPIIHRDIKSSNILLTENFRAKVADFGFARLAADRDSGATHVSTQVKGT AGYLDPEYMRTYQLTEKSDVYSFGVLLVELMTGRRPVEPEREIKERLTAKWAIKKFAEGNAIVILDPKLERTAANNLALEKILELALQCLAPGRQSRPSM RKCAEVLWSIRKDYKEQSTSDFCYLISSKSQGSFSVITEE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00330		CRCK2	calmodulin-binding receptor-li...		Potri.002G161600 [exp]	0	1
AT2G02450	NAC	LOV1, ANAC034, ...	LONG VEGETATIVE PHASE 1, Arabi...		Potri.003G046700 [exp]	3.00	0.9500
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Potri.005G177900 [exp]	8.00	0.9358
AT1G07230		NPC1	non-specific phospholipase C1 ...		Potri.001G250500 [exp]	13.71	0.9386
AT5G38260			Protein kinase superfamily pro...		Potri.015G045200 [exp]	14.17	0.9370
AT2G31220	bHLH	bHLH010	basic helix-loop-helix (bHLH) ...		Potri.016G068500 [exp]	19.39	0.9068
AT3G15030	TCP	TCP4, MEE35	maternal effect embryo arrest ...		Potri.019G091300 [exp]	19.79	0.9264
AT5G41410	HD	BEL1	BELL 1, POX (plant homeobox) f...		Potri.003G131300 [exp]	22.44	0.9264
AT5G38260			Protein kinase superfamily pro...		Potri.015G044875 [exp]	33.91	0.9161
AT5G03880			Thioredoxin family protein (.1...		Potri.006G213000 [exp]	34.13	0.9319
AT2G31220	bHLH	bHLH010	basic helix-loop-helix (bHLH) ...		Potri.006G202100 [exp]	34.95	0.9241

Compare expression of checked genes

Potri.002G161600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.