Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00310 55 / 2e-08 MEE46, EDA8 MATERNAL EFFECT EMBRYO ARREST 46, EMBRYO SAC DEVELOPMENT ARREST 8, Putative membrane lipoprotein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G087500 [exp] 403 / 2e-142 AT4G00310 59 / 9e-10 MATERNAL EFFECT EMBRYO ARREST 46, EMBRYO SAC DEVELOPMENT ARREST 8, Putative membrane lipoprotein (.1.2) Potri.014G099800 [exp] 82 / 5e-18 AT4G00310 55 / 8e-09 MATERNAL EFFECT EMBRYO ARREST 46, EMBRYO SAC DEVELOPMENT ARREST 8, Putative membrane lipoprotein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005116 [exp] 64 / 1e-11 AT4G00310 86 / 3e-19 MATERNAL EFFECT EMBRYO ARREST 46, EMBRYO SAC DEVELOPMENT ARREST 8, Putative membrane lipoprotein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08879 [poplar] [flax] WRC WRC
Representative CDS sequence Show only first row Show all	>Potri.002G161700.1 pacid=42776789 polypeptide=Potri.002G161700.1.p locus=Potri.002G161700 ID=Potri.002G161700.1.v4.1 annot-version=v4.1 ATGAGGATTCGAAAGAACGCAAAGCTATCGTCTCTCGTGTTCTCGCACGGTTCAGGAGCTCAGCCACTACAGACGCACGTTTGCCAGCTTAACCAGTCAC CATGGGATGTGATTTCTTTCTCTCAAGAAACTTATTACCCGTCTTCTTCACCCAGCCAGTTCGAAGGAGAAGATAGCCTTAATGGAAATGGTAGCTTAGG CGATTCTATCGGTGCTGTTGAGAGCGTGGCGTCGATGATGATGGAAGATTCGGAACAGAAGGGAATGATTAAAATGAAGGTCGATAATATGGTTATTATT GACGATAATCATGACAATGAAGGTAACAGGAGATCAGAGATGCTTGACGATTACGAAGGAATGAAAATAGATAGCGAATTCGAGCTAAAGAATTGCAACA AGACTGATGGCAAAGGTTGGCATTGCAAGAATGAGACTAGAAATGGGCTCCCTATGTGCGACCATCATCATCATTTGACATCTCTCAAATCATCATCATG TAACAACGGCAACATTAATGGCAGTGCCATTGCTACAAAAAAACCTGATAAGGGTACTTGTATTACCGGGGCACGCCGTGGTCGGGCAAAGTCAGCTAAA AAAGGGTCATCATCCAACTCAAATCCGTATGAATTTTATTACTATTCTGGGTTTGGGCCGTTGTGGGGCAAGAGAAGAGGAGATAGAGATGCAGTCAACA AGAATGAGGACAAAGATGTTGACAACGGTACCATTATTGATTCCATGACTCAAAATACGACACCGTTTTCAAGTTCTTCGCCAATTGAAAATAATCGGCA GTTTGATTATGTCGAGGAGGAGGAGGACGACGACGACGACAAAGAGGAGGATAGCGGCAAGAAACGGATGCGGAAACCCGTGAAAGCGCGGTCCCTAAAG TCTTTTATGTGA
AA sequence Show only first row Show all	>Potri.002G161700.1 pacid=42776789 polypeptide=Potri.002G161700.1.p locus=Potri.002G161700 ID=Potri.002G161700.1.v4.1 annot-version=v4.1 MRIRKNAKLSSLVFSHGSGAQPLQTHVCQLNQSPWDVISFSQETYYPSSSPSQFEGEDSLNGNGSLGDSIGAVESVASMMMEDSEQKGMIKMKVDNMVII DDNHDNEGNRRSEMLDDYEGMKIDSEFELKNCNKTDGKGWHCKNETRNGLPMCDHHHHLTSLKSSSCNNGNINGSAIATKKPDKGTCITGARRGRAKSAK KGSSSNSNPYEFYYYSGFGPLWGKRRGDRDAVNKNEDKDVDNGTIIDSMTQNTTPFSSSSPIENNRQFDYVEEEEDDDDDKEEDSGKKRMRKPVKARSLK SFM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00310		MEE46, EDA8	MATERNAL EFFECT EMBRYO ARREST ...		Potri.002G161700 [exp]	0	1
AT5G54880			DTW domain-containing protein ...		Potri.001G423900 [exp]	4.58	0.7166
AT2G02470	Alfin	AL6	alfin-like 6 (.1.2)		Potri.003G044700 [exp]	5.29	0.6973
AT1G15390		PDF1A, ATDEF1	peptide deformylase 1A (.1)		Potri.001G171800 [exp]	6.78	0.7349	PDF1.2
AT5G19010		ATMPK16	mitogen-activated protein kina...		Potri.010G029700 [exp]	8.18	0.7548	Pt-ATMPK16.1
AT4G26190			Haloacid dehalogenase-like hyd...		Potri.004G116400 [exp]	9.16	0.6695
AT4G01100		ADNT1	adenine nucleotide transporter...		Potri.003G137500 [exp]	15.29	0.6959
AT1G50200		ACD, ALATS	Alanyl-tRNA synthetase (.1.2)		Potri.005G094300 [exp]	19.07	0.6872	Pt-ALATS.1
AT3G21690			MATE efflux family protein (.1...		Potri.011G002400 [exp]	23.47	0.6360
AT2G06050		AtOPR3, DDE1, O...	DELAYED DEHISCENCE 1, oxophyto...		Potri.004G212100 [exp]	27.12	0.6478
AT5G59770			Protein-tyrosine phosphatase-l...		Potri.001G235400 [exp]	30.01	0.6615

Compare expression of checked genes

Potri.002G161700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.