Plant FIBer expression Database

Potri.002G161801 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G087600
[exp]
68 / 3e-15 AT5G41390 327 / 8e-114 PLAC8 family protein (.1.2)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.002G161801.1 pacid=42776960 polypeptide=Potri.002G161801.1.p locus=Potri.002G161801 ID=Potri.002G161801.1.v4.1 annot-version=v4.1
ATGGTAAGTTTGGGCCACAGCCTGCTGTGGCTGTACCTCCAGTGCGGCAGATGTCACGTATTGATCAGCCAATTCCTCCACATGCCGGCTATGCACCTCA
ACAAACATGTGGGCAGCCTTATGGCTATCCTCCAGCCCCACAAGCTCAAGGTTACCCTCCTCCTGTTGGATATCCCCCTTCTGCCTATCCACAGCCTCAT
GCATATCCTCCACCTGGCCATTCAAGATGATCTGGTTGAATTAGTTCTTCAATGA
AA sequence
>Potri.002G161801.1 pacid=42776960 polypeptide=Potri.002G161801.1.p locus=Potri.002G161801 ID=Potri.002G161801.1.v4.1 annot-version=v4.1
MVSLGHSLLWLYLQCGRCHVLISQFLHMPAMHLNKHVGSLMAILQPHKLKVTLLLLDIPLLPIHSLMHILHLAIQDDLVELVLQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.002G161801
[exp]
0 1
AT5G42920 AtTHO5 THO complex, subunit 5 (.1.2) Potri.002G125300
[exp]
2.44 0.9490
AT3G04400 EMB2171 embryo defective 2171, Ribosom... Potri.010G167700
[exp]
5.19 0.9432
AT5G47540 Mo25 family protein (.1) Potri.019G057100
[exp]
5.47 0.9214
AT2G45260 Plant protein of unknown funct... Potri.014G067600
[exp]
8.36 0.9324
AT3G04400 EMB2171 embryo defective 2171, Ribosom... Potri.011G127250
[exp]
9.16 0.9353
AT3G04830 Protein prenylyltransferase su... Potri.013G038501
[exp]
11.48 0.9178
AT5G15350 AtENODL17 early nodulin-like protein 17 ... Potri.004G121100
[exp]
12.36 0.9244
AT4G19610 nucleotide binding;nucleic aci... Potri.001G081000
[exp]
14.07 0.9090
AT5G51600 ATMAP65-3, PLE PLEIADE, ARABIDOPSIS THALIANA ... Potri.005G057150
[exp]
14.96 0.8919
AT5G62740 AtHIR4, ATHIR1 hypersensitive induced reactio... Potri.015G065001
[exp]
16.49 0.9095

Potri.002G161801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.