Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28350 1705 / 0 Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor (.1.2) AT3G61480 1627 / 0 Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor (.1) AT5G28442 109 / 2e-28 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G087900 [exp] 2059 / 0 AT5G28350 1676 / 0.0 Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005119 [exp] 1896 / 0 AT5G28350 1682 / 0.0 Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor (.1.2) Lus10018824 [exp] 1885 / 0 AT5G28350 1679 / 0.0 Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07064 [poplar] [flax] RIC1 RIC1
Representative CDS sequence Show only first row Show all	>Potri.002G162000.1 pacid=42778051 polypeptide=Potri.002G162000.1.p locus=Potri.002G162000 ID=Potri.002G162000.1.v4.1 annot-version=v4.1 ATGTATATGGCATACGGATGGCCGCAGGTGATCCCTCTAGAACAAGGACTCTGTCCTTCACAGCAGCGGATCATTTATTTCAAAGTCATCAATCGCCTCT TCCTTGTTGTCTCTCCTTCTCGCCTCGAGCTCTGGAGCTCCTCTCAGCATAAAGTGAGGTTAGGCAAGTATAAGAGAGATGCGGAGTCGTTGGAGAGAGA AGGCGAAAATATACAGGCTGTGTGGAGTCCTGATACCAAACTGATAGCCATTCTTACAACATCTTTCTTTTTACATATATTCAAGGTTCAATTCTCTGAA AAAAGAATACAAATTGGAGGGAAGCAACCATCTGGCTTGTTTCTTGCTAATATAACTCTTGTTCTTAATGAGCAAGTGCCCTTTGCAGATAAGGAATTGA CAGTGAGCAATTTTGTAAGTGATAACAAACATATGTTACTAGGACTTTCCAATGGATCTCTATACAGTATCTCCTGGAAGGGAGAGTTTTATGGAGCTTT TGAAATTAATCCCTATTCACGTGACAGCAGTGATACCTCCATCTCACCACATTCTTTAGGTAACGGTTTTGCTTCTGGAAGGGCTTCTTCAGGTTCTGTA TCTAATCATAATATCACCAGGAAGACTGCTATTGTGCAGCTGGAACTTTGCTTGCCGATGAGGTTGCTGTTTGTCTTGTATTCTGATGGACAACTAGTAT CATGCTCTGTAAGCAAGAGAGGTTTAAAGCAAGTTGAATATATCAAACCTGAAAAAAAGTTAGGTTCTGATGATGCTGTATGTACTTCAGTAGCTTCAGA TCAACAAATCCTTGCTGTTGGTACCAGAAGAGGGGTTGTTGAGTTATACAACCTAGCAGAATCTGCATCTCTCATTCGTTCTGTGTCTTTGTCTGACTGG GGCTATTCCATGGATGAAACTGGTCCTGTCAGTTGTATCGCGTGGACACCTGATAATTCTGCTTTTGCTGTTGGGTGGAAGTTAAGAGGACTTACAGTAT GGTCTGTATCTGGGTGTCGTTTGATGTCAACAATTCGTCAAATTGGTTTATCTTTATCTTCTCCAAAGGTTAAGCCAAACCAAGAATGTAAATACGAGGC ATTGATGAATGGCACCTCATTGATGCAGTGGGATGAATATGGTTATAAGCTTTATGTGATTGAAGAAGAGTCTCTTGAGAGAGTTATTGCATTTTCATTT GGCAAATGCTGCCTCTCCAGAGGAGTTTCAGGAATGACATATGTTCGTCAAGTTATTTATGGTGAAGATCGGTTGCTTGTTGTACAGTCCGAAGATACTG ATGAACTCAGAATTCTACATCTAAACCTTCCAGTTTCCTATATCTCCCAAAACTGGCCAGTTCAACATGTTGCAGCTAGCAAGGACGGAATGCACTTAGC TGTTGCAGGCCTCCATGGGTTGATCTTATATGATATACAGCTGAAAAAGTGGCGAGTGTTTGGAGATATTACTCAGGAACAAAAGATTCAGTGTAAAGGG TTATTATGGCTAGGGAAGATTGTTGTTGTCTGCAACTACATTGATTCTTCTAACACGTATGAATTACTTTTTTATCCAAGATACCACCTTGACCAGAGCT CCTTACTTTGTCGAAAGCCATTGCTTGCTAAACCAATGGTGATGGATGTCTATCAAGACCACATACTTGTCACATATCGCCCGTTTGATGTCCACATATT CCATGTGAGATTGTTAGGTGAACTGACTCCTTCTAGCACTCCAGATTTGCAGCTTTCTACAGTACGAGAACTTTCTATCATGACTGCAAAGAGCCATCCT GCAGCTATGCGTTTCATCCCTGACCGGCTTCCAAGAGAGTTGGCCTCAGACAATCATATTTCATCGTCAGAGTTTTTGGACACAGAGCCTGCTAGATGTT TGATACTGAGAACAAATGGGGAACTTTCGCTTTTGGATTTGGATGATGGACATGAAAGAGAGCTCACTGACTCTGTTGAATTATTTTGGGTTACTTGTGG TCAATCAGAGGAGAAGGCAAGTCTAATTGAGGAAGTCTCTTGGCTGGATTACGGCCACCGAGGCATGCAGGTTTGGTATCCATGTCCAGGTGCTGATCCT TTTAAACAGGAAGACTTTTTGCAGTTGGATCCAGAACTAGAATTTGATCGTGAAGTGTATCCTCTAGGGCTTCTTCCAAATGCCGGGTTGGTTGTTGGTG TTTCCCAGAGAATGTCCTTTTCAGCTTGCACTGAATTTCCATGTTTTGAGCCATCTCCTCAAGCTCAAACCATACTGCATTGCTTACTCAGACACCTTCT TCAGAGAGACAAAACAGAGGAGGCTTTGCGGTTAGCACAATTATCAGCAGAAAAGCCTCACTTTTCCCATTGCCTGGAATTGCTCCTTTTTACTGTATTT GATGCAGAAATTTCAAGGCAAAATGTGATCAAGAACCAGGTATCTGTCCCTAAACATGCTGGCAACTGCTCTCTTTTGGAGAAGACCTGTGATTTGATAA GAAACTTCTCAGAGTATCTTGATGTAGTTGTGAGTGTTGCAAGAAAAACTGATGGTCGATATTGGGCAGATTTATTCTCTGCTGCTGGAAGATCAACAGA GTTGTTTGAAGAATGCTTCCTAAGGAGATGGTATCGTACTGCAGCTTGCTATATACTTGTGATCGCGAAACTTGAAGGTCCTGCTGTCAGTCAATACTGC GCCTTACAATTATTGCAGGCAACACTTGACGAATCTTTGTATGACCTTGCTGGAGAACTGGTGCGCTTCTTGCTGAGGTCTGGAAAGGAATATGACCAGA CATCGACTGATTCAGATATGCCATCTCCCAGATTTTTGGGTTATTTTCTTTTCCATTCCAGTTACAAGAAGCCATCATTGGACAAGAGTAATTCCTTGAA AGAGCAAAGTGCTCATATTGCTTCTGTGAAGAGCATCTTAGAAAGCCATGCTAGCTATTTGATGTCAGGGAAAGAACTTTCCAAGCTTGTGGCTTTTGTA AAAGGCACTCAGTTTGATTTAGTGGAATACCTTCAACGAGAAAGATATGGTAGTGCTCGCTTAGAGAATTTTGCATCAGGGCTGGAATTGATTGGGCAGA AGCTTCAAATGGGAATGTTGCAAAGCCGGTTGGACGCAGAGTTTCTATTGGCTCATATGTGTTCTGTGAAGTTCAAGGAATGGATAGTTGTTCTGGCCAC ACTTTTAAGACGAGCTGAGGTTCTTTTTGATCTTTTCCAGCATGATATCAGGTTGTGGAAAGCATATAGCATCACCCTTCAGTCACGCCCTGCATTTTCT GAATACCATGATCTGCTTGAAGGCTTGGAAGAGAGACTCTCATCTGTCTCAAATTTGCAAGAGAAATGA
AA sequence Show only first row Show all	>Potri.002G162000.1 pacid=42778051 polypeptide=Potri.002G162000.1.p locus=Potri.002G162000 ID=Potri.002G162000.1.v4.1 annot-version=v4.1 MYMAYGWPQVIPLEQGLCPSQQRIIYFKVINRLFLVVSPSRLELWSSSQHKVRLGKYKRDAESLEREGENIQAVWSPDTKLIAILTTSFFLHIFKVQFSE KRIQIGGKQPSGLFLANITLVLNEQVPFADKELTVSNFVSDNKHMLLGLSNGSLYSISWKGEFYGAFEINPYSRDSSDTSISPHSLGNGFASGRASSGSV SNHNITRKTAIVQLELCLPMRLLFVLYSDGQLVSCSVSKRGLKQVEYIKPEKKLGSDDAVCTSVASDQQILAVGTRRGVVELYNLAESASLIRSVSLSDW GYSMDETGPVSCIAWTPDNSAFAVGWKLRGLTVWSVSGCRLMSTIRQIGLSLSSPKVKPNQECKYEALMNGTSLMQWDEYGYKLYVIEEESLERVIAFSF GKCCLSRGVSGMTYVRQVIYGEDRLLVVQSEDTDELRILHLNLPVSYISQNWPVQHVAASKDGMHLAVAGLHGLILYDIQLKKWRVFGDITQEQKIQCKG LLWLGKIVVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKPLLAKPMVMDVYQDHILVTYRPFDVHIFHVRLLGELTPSSTPDLQLSTVRELSIMTAKSHP AAMRFIPDRLPRELASDNHISSSEFLDTEPARCLILRTNGELSLLDLDDGHERELTDSVELFWVTCGQSEEKASLIEEVSWLDYGHRGMQVWYPCPGADP FKQEDFLQLDPELEFDREVYPLGLLPNAGLVVGVSQRMSFSACTEFPCFEPSPQAQTILHCLLRHLLQRDKTEEALRLAQLSAEKPHFSHCLELLLFTVF DAEISRQNVIKNQVSVPKHAGNCSLLEKTCDLIRNFSEYLDVVVSVARKTDGRYWADLFSAAGRSTELFEECFLRRWYRTAACYILVIAKLEGPAVSQYC ALQLLQATLDESLYDLAGELVRFLLRSGKEYDQTSTDSDMPSPRFLGYFLFHSSYKKPSLDKSNSLKEQSAHIASVKSILESHASYLMSGKELSKLVAFV KGTQFDLVEYLQRERYGSARLENFASGLELIGQKLQMGMLQSRLDAEFLLAHMCSVKFKEWIVVLATLLRRAEVLFDLFQHDIRLWKAYSITLQSRPAFS EYHDLLEGLEERLSSVSNLQEK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G28350			Quinoprotein amine dehydrogena...		Potri.002G162000 [exp]	0	1
AT5G19840			2-oxoglutarate (2OG) and Fe(II...		Potri.005G215200 [exp]	4.47	0.7513
AT1G74580			Pentatricopeptide repeat (PPR)...		Potri.010G234500 [exp]	5.00	0.7550
AT4G19040		EDR2	ENHANCED DISEASE RESISTANCE 2 ...		Potri.003G100600 [exp]	7.74	0.7042
AT1G33980		ATUPF3, UPF3	Smg-4/UPF3 family protein (.1....		Potri.019G077500 [exp]	10.48	0.7034
AT5G41480		EMB9, ATDFA, GL...	GLOBULAR ARREST1, EMBRYO DEFEC...		Potri.015G022400 [exp]	11.53	0.7047
AT5G50530			CBS / octicosapeptide/Phox/Bem...		Potri.015G098100 [exp]	15.49	0.7307
AT3G53090		UPL7	ubiquitin-protein ligase 7 (.1...		Potri.016G096500 [exp]	15.81	0.7366
AT1G19100			Histidine kinase-, DNA gyrase ...		Potri.012G089000 [exp]	17.20	0.7442
AT2G25850		PAPS2	poly(A) polymerase 2 (.1), pol...		Potri.018G057200 [exp]	18.89	0.7317
AT1G15240			Phox-associated domain;Phox-li...		Potri.003G053200 [exp]	29.39	0.7452

Compare expression of checked genes

Potri.002G162000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.