Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00290 578 / 0 Mechanosensitive ion channel protein (.1) AT4G00234 279 / 9e-91 unknown protein AT5G10490 74 / 8e-14 MSL2 MSCS-like 2 (.1.2.3) AT1G58200 74 / 1e-13 MSL3 MSCS-like 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G088200 [exp] 872 / 0 AT4G00290 580 / 0.0 Mechanosensitive ion channel protein (.1) Potri.002G105900 [exp] 73 / 2e-13 AT1G58200 729 / 0.0 MSCS-like 3 (.1.2) Potri.007G011100 [exp] 72 / 5e-13 AT5G10490 714 / 0.0 MSCS-like 2 (.1.2.3) Potri.005G154000 [exp] 70 / 3e-12 AT1G58200 734 / 0.0 MSCS-like 3 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018822 [exp] 583 / 0 AT4G00290 529 / 0.0 Mechanosensitive ion channel protein (.1) Lus10005121 [exp] 497 / 3e-173 AT4G00290 446 / 1e-153 Mechanosensitive ion channel protein (.1) Lus10009277 [exp] 77 / 1e-14 AT1G58200 710 / 0.0 MSCS-like 3 (.1.2) Lus10002652 [exp] 69 / 4e-12 AT5G10490 780 / 0.0 MSCS-like 2 (.1.2.3) Lus10012733 [exp] 60 / 4e-09 AT1G58200 630 / 0.0 MSCS-like 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00924 [poplar] [flax] MS_channel Mechanosensitive ion channel
Representative CDS sequence Show only first row Show all	>Potri.002G162100.1 pacid=42779604 polypeptide=Potri.002G162100.1.p locus=Potri.002G162100 ID=Potri.002G162100.1.v4.1 annot-version=v4.1 ATGGCTGGACTTAGGCTTTCAATGCTAAAAAATTCGCTCTGTATTTCCATTAACTCCCTTTCATGGCAATCACTTCAGTTTTGTAATGTTCATGGAAGTA CTCTAAGATCAGCATATGCTATCATAAATCGTGGTTATTACAAAGATGAATCAAGATTGGCTGGAAATCTGACAAATTTTAAAGTTGTGAGATCTGACAC TTGTGTCAATAGCCAATCTTATAGGATTGAACCCGTGAGAGGATTTTCGTCAACTTCATCGAATGTGTTGTTTCGAAGTGCTGTTCCTTTCATTTCAATG AGACCCGAGCTGAGCTATCGATCATTCTCTTGGTCATCTGGTGCCAAAGTTGATAAACCTGTCGGTAATGAAGTTCCAGCTTCATCCGGTGGAAATGATG TGGATGTTAGTAACAGTGGTGCTATTGTAAGTGACTGGATTAATAAGGTTAAAGAAGCTTGGCAAAGTACAGTGGATGCAGTAACTTATTCTGGCCAAAA GGCTATAGAGACATCCGATGAACTGACCCCATATGCTCAGCAGTTGCTTGATTCACATCCGTATCTTAAAAATGTTGTTGTTCCAGTTGGTTCGACTTTG ACTGGTACCGTAGTGGCTTGGGTGGTGATGCCTAGACTTTTGAGGCGATTTCACAAGTATTCATTGCAAACTCCTGCTGCTTTGCTATCTGGAGGCATAT CTGGGGAGCAAATTCCATATGAGAAAAGCATATTGGGTGCTTTGGAAGATCCTTTGAGATATTTAATCACCTTCATGGCATTTTCTCAAATTGCTGTGAT GGTGGCACCTACTACGATTGCTTCTCAATATATAGCACAAGTATGGAGGGGTGCTGCTATTCTTTCTTTTGTATGGTTTCTGCATCGGTGGAAGACAAAT GTGTTTAATCGTGTGATAGCTTCAGCAACGGTAGATCAGGAAAAGCTGTTAACTCTTGATAGAGTTTCTTCTGTTGGTCTTTTTGTTATTGGACTGATGG CTTTAGCTGAGGCTTGTGGGGTAGCAGTGCAATCTTTTCTGACTGTGGGTGGCATTGGAGGAGTTGCTACTGCTTTTGCTGCCAAAGATGTCCTTGGGAA TGTTCTCAGTGGGTTGTCTATGCAATTTTCAAAGCCCTTTTCACTTGGAGATACAATAAAGGCTGGGTCTATAGAAGGTCAAGTGGTTGAAATGGGACTT ACAACCACTTCCTTACTGAATGTTGAGCAATTCCCTGTACTCGTTCCAAATTCTTTGTTTTCCAGTCAGGTAATTGTGAACAAGTCTCGTGCCCAATGGC GTGCAGTTGTCTCCAAAATTCCTGTGATAGTTGATGACATGGAGAAGATACCCCAGATATCAAATGACATCAAGAGCATGCTAAATTCAAACCCAAACGT TTTCTTGGGAAAGGAGGCTCCTTACTGTTACTTATCTAGAATAGAAAGTTCATTTGCCGAACTGACTCTTGGTTGCAATCTCAAGCAAATGAGCAAAGAT GAATTATACACTACGGAGGAAGACATTCTTCTGCAGTCAGTCAGGATAATAAAGGAGCGTGGTGCTAAATTAAGCAGCACATGGCAGGACAGTACCGGTC AGTGA
AA sequence Show only first row Show all	>Potri.002G162100.1 pacid=42779604 polypeptide=Potri.002G162100.1.p locus=Potri.002G162100 ID=Potri.002G162100.1.v4.1 annot-version=v4.1 MAGLRLSMLKNSLCISINSLSWQSLQFCNVHGSTLRSAYAIINRGYYKDESRLAGNLTNFKVVRSDTCVNSQSYRIEPVRGFSSTSSNVLFRSAVPFISM RPELSYRSFSWSSGAKVDKPVGNEVPASSGGNDVDVSNSGAIVSDWINKVKEAWQSTVDAVTYSGQKAIETSDELTPYAQQLLDSHPYLKNVVVPVGSTL TGTVVAWVVMPRLLRRFHKYSLQTPAALLSGGISGEQIPYEKSILGALEDPLRYLITFMAFSQIAVMVAPTTIASQYIAQVWRGAAILSFVWFLHRWKTN VFNRVIASATVDQEKLLTLDRVSSVGLFVIGLMALAEACGVAVQSFLTVGGIGGVATAFAAKDVLGNVLSGLSMQFSKPFSLGDTIKAGSIEGQVVEMGL TTTSLLNVEQFPVLVPNSLFSSQVIVNKSRAQWRAVVSKIPVIVDDMEKIPQISNDIKSMLNSNPNVFLGKEAPYCYLSRIESSFAELTLGCNLKQMSKD ELYTTEEDILLQSVRIIKERGAKLSSTWQDSTGQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00290			Mechanosensitive ion channel p...		Potri.002G162100 [exp]	0	1
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Potri.009G093500 [exp]	1.41	0.7831
AT1G70100			unknown protein		Potri.008G192800 [exp]	5.47	0.7742
AT1G02260			Divalent ion symporter (.1)		Potri.015G146900 [exp]	6.32	0.7574
AT1G21980		ATPIPK1, ATPIP5...	phosphatidylinositol-4-phospha...		Potri.004G139900 [exp]	8.30	0.7792
AT2G21120			Protein of unknown function (D...		Potri.019G001100 [exp]	11.53	0.7612
AT5G01720			RNI-like superfamily protein (...		Potri.006G105400 [exp]	13.82	0.7870
AT1G29370			Kinase-related protein of unkn...		Potri.005G202851 [exp]	14.69	0.7755
AT4G27510			unknown protein		Potri.004G133900 [exp]	20.78	0.7595
AT5G35330		MBD2, MBD02, AT...	METHYL-CPG-BINDING DOMAIN PROT...		Potri.018G145500 [exp]	21.79	0.7357
AT5G35330		MBD2, MBD02, AT...	METHYL-CPG-BINDING DOMAIN PROT...		Potri.018G146700 [exp]	30.46	0.6679

Compare expression of checked genes

Potri.002G162100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.