Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22590 371 / 7e-125 UDP-Glycosyltransferase superfamily protein (.1) AT5G49690 360 / 2e-120 UDP-Glycosyltransferase superfamily protein (.1) AT5G65550 327 / 1e-107 UDP-Glycosyltransferase superfamily protein (.1) AT1G64910 214 / 4e-64 UDP-Glycosyltransferase superfamily protein (.1) AT5G54010 213 / 1e-63 UDP-Glycosyltransferase superfamily protein (.1) AT3G29630 203 / 4e-60 UDP-Glycosyltransferase superfamily protein (.1) AT5G53990 201 / 3e-59 UDP-Glycosyltransferase superfamily protein (.1) AT1G50580 201 / 3e-59 UDP-Glycosyltransferase superfamily protein (.1) AT4G09500 199 / 2e-58 UDP-Glycosyltransferase superfamily protein (.1.2) AT4G27570 198 / 3e-58 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G088400 [exp] 610 / 0 AT2G22590 374 / 4e-125 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G042800 [exp] 441 / 4e-152 AT5G49690 377 / 3e-127 UDP-Glycosyltransferase superfamily protein (.1) Potri.010G182575 [exp] 404 / 1e-137 AT5G49690 468 / 7e-163 UDP-Glycosyltransferase superfamily protein (.1) Potri.012G034100 [exp] 391 / 2e-132 AT2G22590 505 / 2e-177 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G030600 [exp] 389 / 1e-131 AT2G22590 537 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.003G184400 [exp] 348 / 1e-115 AT5G49690 549 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.006G179700 [exp] 236 / 2e-72 AT5G54010 349 / 2e-116 UDP-Glycosyltransferase superfamily protein (.1) Potri.010G182650 [exp] 218 / 5e-68 AT5G65550 254 / 4e-82 UDP-Glycosyltransferase superfamily protein (.1) Potri.011G097900 [exp] 221 / 8e-67 AT5G54010 498 / 1e-174 UDP-Glycosyltransferase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025711 [exp] 367 / 7e-123 AT2G22590 473 / 2e-164 UDP-Glycosyltransferase superfamily protein (.1) Lus10035951 [exp] 357 / 3e-119 AT2G22590 464 / 3e-161 UDP-Glycosyltransferase superfamily protein (.1) Lus10012726 [exp] 352 / 2e-117 AT2G22590 471 / 3e-164 UDP-Glycosyltransferase superfamily protein (.1) Lus10027850 [exp] 320 / 6e-105 AT5G49690 560 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10003154 [exp] 230 / 7e-70 AT5G54010 318 / 3e-104 UDP-Glycosyltransferase superfamily protein (.1) Lus10042242 [exp] 223 / 3e-69 AT5G65550 280 / 9e-92 UDP-Glycosyltransferase superfamily protein (.1) Lus10008453 [exp] 214 / 8e-64 AT5G54010 539 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10043445 [exp] 200 / 2e-58 AT5G65550 225 / 3e-68 UDP-Glycosyltransferase superfamily protein (.1) Lus10013337 [exp] 198 / 6e-58 AT5G54010 452 / 1e-156 UDP-Glycosyltransferase superfamily protein (.1) Lus10003323 [exp] 181 / 4e-51 AT2G36800 493 / 2e-171 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.002G162300.1 pacid=42778138 polypeptide=Potri.002G162300.1.p locus=Potri.002G162300 ID=Potri.002G162300.1.v4.1 annot-version=v4.1 ATGGCAAGTGATTTGCATATAGTAATATTTCCATGGTCGGCCTTTGGTCACATATTGCCATTTTTCCATTTCTCCAAAGCTTTAGCCGAAGCTGGAGTTC ATGTCTCCTTTGTATCAACTCCCAGGAATATACAGCGACTACCTGCAATATCACCAACCTTAGCACCGCTAATAAACTTAGTGGAGCTTCCTTTTCCAGC TTTGGACGTTAAGTATGGCTTGCCAGAAGGAGCTGAGGCAACAGCGGACATTCCTGCTGAGAAAATCCAATACTTGAAGATCGCCTATGATCTCTTACAA CACCCCTTCAAGCAGTTTGTCGCTGAGAAGTCCCCGAATTGGATAATTGTTGATTTTTGTTCTCACTGGGCTGTTGACATTGCAAAAGAATATGGTATCC CGCTAATATACTTGTCGATTTTCTCTGGAGTCATGGGAGCGTTTATGGGGCATCCAGGATATTTTGTTGGCGATGGCCAGAAGAGGTATTGGGGATCCCC AGAATCTCTGACTTCACCACCGGAGTGGATAACCTTCCCATCGTCTGTAGCTTTCCGAAGCTATGAGGCAAAAAACATGTATCCTGGGATATATGGGGAG AATGCCTCAGGCATAAGAGATGCCGAACGGGTAGCAAAGACTGTAAGTGGATGTCAAGCTATAGCTGTCCGTAGCTGCATTGAATTTGAAGGTGAGTACA TGGATGTATACCAGAAAATCATGAGTAAGCAGGTAATTCCAATAGGTTTGCTCCCTCCAGAAAAACCAGAGGAAAGAGAAATAACTGATGGGACATGGAA CACGATCTTCGAGTGGCTTGACAATCAAGAACACGAATCTGTGGTATTTGTTGGATTTGGCAGTGAGTGTAAATTGACCAAAGATGAAGTTTATGAGATA GCTTATGGGCTGGAGCTATCAAAATTGCCATTTCTCTGGGCACTTAGGAAACCCAATTGGGCAGCAACAGATCTCGATGTTCTACCCCCAGAATTCAATA ACAAGACTTCCGAGAAAGGGATTGTCTCCATAGGATGGGCACCACAACTAGAACTTCTATCGCATCCATCAATAGGGGGATCATTGTTTCACTCCGGGTG GGGTTCCGTAATAGAAACTCTGCAGTATGGACATTGTTTAATTGTTTTGCCATTTATCGCAGATCAAGGGCTGAATGCCAGGCTTCTTGTGGAGAAGGGC TTGGCTGTTGAGGTAGACAGGAAGGAAGATGGATCATTTACCAGACATGATATTGCCAAGTCTTTGAGACTAGCTATGGTCTCGGAGGAAGGAAGTCAGC TGAAGACTCGAGCAAAAGATGCCGCTACCATATTCCAGAATAGGAAGCTGCATCAGGACTACATCAATAGGTTTGTGAAGTATCTGAAGGATGGAGTTTC TTGA
AA sequence Show only first row Show all	>Potri.002G162300.1 pacid=42778138 polypeptide=Potri.002G162300.1.p locus=Potri.002G162300 ID=Potri.002G162300.1.v4.1 annot-version=v4.1 MASDLHIVIFPWSAFGHILPFFHFSKALAEAGVHVSFVSTPRNIQRLPAISPTLAPLINLVELPFPALDVKYGLPEGAEATADIPAEKIQYLKIAYDLLQ HPFKQFVAEKSPNWIIVDFCSHWAVDIAKEYGIPLIYLSIFSGVMGAFMGHPGYFVGDGQKRYWGSPESLTSPPEWITFPSSVAFRSYEAKNMYPGIYGE NASGIRDAERVAKTVSGCQAIAVRSCIEFEGEYMDVYQKIMSKQVIPIGLLPPEKPEEREITDGTWNTIFEWLDNQEHESVVFVGFGSECKLTKDEVYEI AYGLELSKLPFLWALRKPNWAATDLDVLPPEFNNKTSEKGIVSIGWAPQLELLSHPSIGGSLFHSGWGSVIETLQYGHCLIVLPFIADQGLNARLLVEKG LAVEVDRKEDGSFTRHDIAKSLRLAMVSEEGSQLKTRAKDAATIFQNRKLHQDYINRFVKYLKDGVS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G22590			UDP-Glycosyltransferase superf...		Potri.002G162300 [exp]	0	1
AT2G38250	Trihelix		Homeodomain-like superfamily p...		Potri.003G104500 [exp]	1.00	0.8550
AT1G28160	AP2_ERF		Integrase-type DNA-binding sup...		Potri.003G161000 [exp]	6.16	0.7985	ERF64
AT3G45070			P-loop containing nucleoside t...		Potri.010G138450 [exp]	23.79	0.8236
AT1G54330	NAC	ANAC020	NAC domain containing protein ...		Potri.010G174600 [exp]	27.44	0.8193
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Potri.002G134500 [exp]	28.14	0.8170	CYP721.5
AT4G31980			unknown protein		Potri.003G207802 [exp]	28.24	0.8034
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Potri.004G150400 [exp]	36.02	0.8067	Pt-CLB6.1
AT3G49690	MYB	ATMYB84, RAX3	REGULATOR OF AXILLARY MERISTEM...		Potri.007G007900 [exp]	36.24	0.8146
AT4G27220			NB-ARC domain-containing disea...		Potri.019G020500 [exp]	37.73	0.8113
AT1G25510			Eukaryotic aspartyl protease f...		Potri.008G118100 [exp]	50.64	0.7725

Compare expression of checked genes

Potri.002G162300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.