Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61490 734 / 0 Pectin lyase-like superfamily protein (.1.2.3) AT4G23500 671 / 0 Pectin lyase-like superfamily protein (.1) AT3G48950 647 / 0 Pectin lyase-like superfamily protein (.1) AT2G23900 611 / 0 Pectin lyase-like superfamily protein (.1) AT3G62110 469 / 5e-163 Pectin lyase-like superfamily protein (.1) AT4G23820 409 / 4e-140 Pectin lyase-like superfamily protein (.1) AT4G33440 394 / 1e-133 Pectin lyase-like superfamily protein (.1) AT5G41870 371 / 5e-125 Pectin lyase-like superfamily protein (.1) AT3G16850 370 / 2e-124 Pectin lyase-like superfamily protein (.1) AT3G06770 363 / 5e-122 Pectin lyase-like superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G100000 [exp] 739 / 0 AT4G23500 701 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G131700 [exp] 729 / 0 AT3G61490 688 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Potri.017G145900 [exp] 653 / 0 AT3G48950 659 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.004G073900 [exp] 625 / 0 AT3G48950 635 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.014G112100 [exp] 455 / 1e-157 AT3G62110 649 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.002G186900 [exp] 453 / 8e-157 AT3G62110 666 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.010G005500 [exp] 403 / 2e-137 AT3G16850 497 / 1e-174 Pectin lyase-like superfamily protein (.1) Potri.008G211500 [exp] 402 / 5e-137 AT3G16850 509 / 2e-179 Pectin lyase-like superfamily protein (.1) Potri.007G105800 [exp] 392 / 1e-132 AT4G33440 642 / 0.0 Pectin lyase-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007922 [exp] 814 / 0 AT3G61490 743 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Lus10017517 [exp] 725 / 0 AT4G23500 675 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10028766 [exp] 722 / 0 AT3G61490 670 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Lus10027516 [exp] 590 / 0 AT3G48950 629 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10039279 [exp] 587 / 0 AT3G48950 624 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10038030 [exp] 453 / 7e-157 AT3G62110 632 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10003589 [exp] 400 / 8e-136 AT4G33440 649 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10014799 [exp] 399 / 3e-135 AT4G33440 630 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10003890 [exp] 397 / 6e-135 AT4G23820 657 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10032374 [exp] 396 / 1e-134 AT4G23820 656 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF00295 [poplar] [flax] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Potri.002G162400.6 pacid=42779673 polypeptide=Potri.002G162400.6.p locus=Potri.002G162400 ID=Potri.002G162400.6.v4.1 annot-version=v4.1 ATGGAAACTCGAGTGGTTCTAGCGTTACTTGTGGTTGCCTTCATTAGCTTCAGAGGTGCTGAGAGCAGAAAGGCGAGGATTTTGGACTCCTTTGAGTACA GTGCCATAAATTGCAGGGCTCACAGTGCATCATTAACTGATTTCGGAGGAGTTGGGGATGGAACAACATCGAACACTAAAGCATTTAAGGATGCAATTGA TCATTTGAGTCAGTTTTCATCAGATGGTGGCTCTCAGCTCTTTGTTCCTGCTGGAAAATGGTTGACTGGTAGCTTCAGTCTTACCAGCCACTTCACACTC TACCTACACAAGGATGCTGTGCTTCTTGCCTCTCAGGACATGCAAGAATGGCCAGTGATGAAACCTCTGCCATCATACGGCAGAGGGAGGGATGCAGCAG CTGGAAGGTACAGCAGTCTCATATTTGGAACGAACCTCACTGACGTTATTATTACAGGGAACAATGGCACAATTGACGGCCAGGGAGCTTTCTGGTGGCA GAACTTCCACAAGGGCAAGCTAAAATACACCAGGCCTTACTTAATTGAGATCATGTTCTCAGATACTATCCAAATTTCAAATCTGACACTCCTGAATTCC CCGTCTTGGAATGTTCATCCTGTTTACAGCAGAGATATTCTTGTGCAAGGCATTACCATCATCGCTCCAATCTCATCACCAAATACCGATGGAATTAATC CAGATTCCTGTACAAACACTAAAATTGAAGATTGTTACATAGTTTCTGGAGACGATTGTGTGGCAGTTAAAAGCGGTTGGGACGAGTACGGGATTGCGTT TGGAATGCCCACAAAGCAACTAGTCATCAGACGGCTCACGTGCATCTCTCCATACAGTGCCACGATTGCTCTAGGGAGTGAAATGTCGGGTGGGATAGAA GATGTTAGAGCAGAGGATATCACAGCCATCCACACAGAATCTGGGGTCAGGATCAAAACTGCTGTAGGGAGAGGAGGGTATGTGAAAGACATATACGTGA AGAGAATGACTATGCATACCATGAAATGGGTCTTTTGGATGACTGGAAATTATGGGTCACATGCTGATAAGAATTATGACCCAAATGCACTGCCATTGAT TCAAGGCATTAATTACAGGGACATGGTTGCCGATAATGTGACAATGGCAGCTAGATTGGAGGGCATTGCAGGCGATCCATTCAAGGAAATTTGCATCTCT AATGTTACAATCGGATTGGCACCGAAGGCAAAGAAGGTGCCGTGGACCTGCACCGAAATTGAGGGGATGACAAGCGGGGTAAGTCCACGGCCATGTGATT TGCTACCGGATCAGGGGCCAGAGAAAATCACATCCTGTGATTTCCCTCCGGAGAATATACCAATCGACTTGGTGCAGTTCAAGACGTGCTCCTTCGGAAT GAGTTACATGTGA
AA sequence Show only first row Show all	>Potri.002G162400.6 pacid=42779673 polypeptide=Potri.002G162400.6.p locus=Potri.002G162400 ID=Potri.002G162400.6.v4.1 annot-version=v4.1 METRVVLALLVVAFISFRGAESRKARILDSFEYSAINCRAHSASLTDFGGVGDGTTSNTKAFKDAIDHLSQFSSDGGSQLFVPAGKWLTGSFSLTSHFTL YLHKDAVLLASQDMQEWPVMKPLPSYGRGRDAAAGRYSSLIFGTNLTDVIITGNNGTIDGQGAFWWQNFHKGKLKYTRPYLIEIMFSDTIQISNLTLLNS PSWNVHPVYSRDILVQGITIIAPISSPNTDGINPDSCTNTKIEDCYIVSGDDCVAVKSGWDEYGIAFGMPTKQLVIRRLTCISPYSATIALGSEMSGGIE DVRAEDITAIHTESGVRIKTAVGRGGYVKDIYVKRMTMHTMKWVFWMTGNYGSHADKNYDPNALPLIQGINYRDMVADNVTMAARLEGIAGDPFKEICIS NVTIGLAPKAKKVPWTCTEIEGMTSGVSPRPCDLLPDQGPEKITSCDFPPENIPIDLVQFKTCSFGMSYM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G61490			Pectin lyase-like superfamily ...		Potri.002G162400 [exp]	0	1
AT1G48100			Pectin lyase-like superfamily ...		Potri.010G152000 [exp]	1.73	0.7912
AT4G39010		ATGH9B18	glycosyl hydrolase 9B18 (.1)		Potri.009G123900 [exp]	4.24	0.7101
AT5G66460		MAN7, AtMAN7	endo-beta-mannase 7, Glycosyl ...		Potri.005G229600 [exp]	5.19	0.6672
AT3G03770			Leucine-rich repeat protein ki...		Potri.008G014300 [exp]	5.29	0.7057
AT2G36985		DVL16, ROT4	ROTUNDIFOLIA4, DEVIL 16, DVL f...		Potri.008G035900 [exp]	6.00	0.6361
AT3G06330			RING/U-box superfamily protein...		Potri.008G196400 [exp]	11.83	0.6582
AT1G14890			Plant invertase/pectin methyle...		Potri.008G132600 [exp]	19.36	0.6911
AT5G66460		MAN7, AtMAN7	endo-beta-mannase 7, Glycosyl ...		Potri.007G022000 [exp]	22.36	0.6262
AT1G60590			Pectin lyase-like superfamily ...		Potri.010G042100 [exp]	23.91	0.6257
AT5G02530			RNA-binding (RRM/RBD/RNP motif...		Potri.008G052601 [exp]	28.49	0.6250

Compare expression of checked genes

Potri.002G162400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.