Plant FIBer expression Database

Potri.002G162600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G46080 456 / 1e-161 unknown protein
AT1G01550 405 / 2e-141 BPS1 BYPASS 1, Protein of unknown function (DUF793) (.1), Protein of unknown function (DUF793) (.2)
AT4G01360 238 / 6e-76 unknown protein
AT3G61500 105 / 4e-26 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G088600
[exp]
590 / 0 AT2G46080 431 / 1e-151 unknown protein
Potri.010G171000
[exp]
98 / 7e-23 AT1G01550 69 / 7e-13 BYPASS 1, Protein of unknown function (DUF793) (.1), Protein of unknown function (DUF793) (.2)
Potri.008G085600
[exp]
81 / 8e-17 AT2G46080 52 / 3e-07 unknown protein
Potri.003G018700
[exp]
47 / 7e-06 AT1G22030 266 / 2e-87 unknown protein
Potri.001G211900
[exp]
44 / 0.0001 AT1G22030 291 / 2e-97 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018821
[exp]
482 / 6e-172 AT2G46080 431 / 5e-152 unknown protein
Lus10005122
[exp]
481 / 2e-171 AT2G46080 432 / 1e-152 unknown protein
Lus10036385
[exp]
479 / 8e-171 AT2G46080 434 / 4e-153 unknown protein
Lus10007920
[exp]
464 / 6e-165 AT2G46080 433 / 8e-153 unknown protein
Lus10039581
[exp]
67 / 4e-12 AT1G01550 63 / 5e-11 BYPASS 1, Protein of unknown function (DUF793) (.1), Protein of unknown function (DUF793) (.2)
Lus10005326
[exp]
57 / 6e-09 AT1G01550 61 / 3e-10 BYPASS 1, Protein of unknown function (DUF793) (.1), Protein of unknown function (DUF793) (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0133 AT14A-like PF03087 DUF241 Arabidopsis protein of unknown function
Representative CDS sequence
>Potri.002G162600.4 pacid=42779891 polypeptide=Potri.002G162600.4.p locus=Potri.002G162600 ID=Potri.002G162600.4.v4.1 annot-version=v4.1
ATGAGTCGACCACAAGAGCCACACCGCCCTTTCTTCCCATTCGGAAATCCTTTCAGGATGCTATCTTCAAAGGGTTCTCAACTGTCCCCAAGACTTCTTT
CTCTATTAAATGCTTTTGAGGATGCTTTGGCAGCAAGGTTGCGGAAACTTAATCCTAAAGACAAGTATGATGTTCTTAGCTTGGCATGGATGAAATTGGC
AATGGAGTCACTCTGTGAGACTCATACTGACATAAAAACCCTCACCACCGAACTTGATCTCCCTGTGACTGACTGGGATGAGAAGTGGATAGATGTGTAC
TTGGACATCAGTGTGAAATTGCTTGATATTTGTGTTGCTTTTAGTTCTGAGCTCTTGCGCCTGAACCAAGGTCATCTCATGCTTCAATGTGCCCTGCATA
ATTTGGAGTCCAACACTTCAGAGAAGCTTGTGCGGGCACGTTCTTCTATAGATAGCTGGAGACAGCACATTGGCTCAAAGAACCCTAGACTGGAAAACTG
TAAATCCATCCTGGATGGTCTTGTGGATTCACTGAGTCTGCCAAAGGTTAAGAACTCAGCCAAAGGAAAGGTGTTGATGCAAGCTATGTATGGAGTTAAG
ATACATACAGTGTTTGTATGTAGTGTCTTAGCTACTGTGTTTTCAGGTAATTCAAAGAATCTGTTAGATTTGGATGTTGCCAACACAACAATGTGGGTGC
AAGCTTTTTCTGATTTGCAAACTAATGTAAATGGAGGAATTAGAGATATATTTTCTCAAAGGAAATTTACTGCCTTGAAAGAATTAGATGAAGTTGATAC
TGCTGTGAAGAATTTATATCCCATGATCCAAGATGGTACGAGGCCTATTGAAGCTGAAGCATTCAGTAATTCTTTTTCAGATTTGGGGAGGAGAGCAGAA
AAACTTTCCCAAGGGCTAGATTTTCTTACTAAGGTAGTAGATGGCTTTTTCAAAATAGTTTTAAGTGGGCGTGATGCTTTGCTTTGTAACTTGAGAGTGT
CTGATACTGTTGCTGACCCATTCCCAGGGAGCAATGGGGAACAGTTTGTAAGATAG
AA sequence
>Potri.002G162600.4 pacid=42779891 polypeptide=Potri.002G162600.4.p locus=Potri.002G162600 ID=Potri.002G162600.4.v4.1 annot-version=v4.1
MSRPQEPHRPFFPFGNPFRMLSSKGSQLSPRLLSLLNAFEDALAARLRKLNPKDKYDVLSLAWMKLAMESLCETHTDIKTLTTELDLPVTDWDEKWIDVY
LDISVKLLDICVAFSSELLRLNQGHLMLQCALHNLESNTSEKLVRARSSIDSWRQHIGSKNPRLENCKSILDGLVDSLSLPKVKNSAKGKVLMQAMYGVK
IHTVFVCSVLATVFSGNSKNLLDLDVANTTMWVQAFSDLQTNVNGGIRDIFSQRKFTALKELDEVDTAVKNLYPMIQDGTRPIEAEAFSNSFSDLGRRAE
KLSQGLDFLTKVVDGFFKIVLSGRDALLCNLRVSDTVADPFPGSNGEQFVR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G46080 unknown protein Potri.002G162600
[exp]
0 1
AT2G40270 Protein kinase family protein ... Potri.008G072100
[exp]
10.67 0.7577
AT1G01650 ATSPPL4 ARABIDOPSIS THALIANA SIGNAL PE... Potri.014G085300
[exp]
15.87 0.7626
AT1G06650 2-oxoglutarate (2OG) and Fe(II... Potri.010G073100
[exp]
33.76 0.7031
Potri.013G070900
[exp]
62.86 0.7150
AT5G66880 SNRK2-3, SNRK2.... SUCROSE NONFERMENTING 1 \(SNF1... Potri.005G134400
[exp]
74.61 0.7179
AT4G36550 ARM repeat superfamily protein... Potri.005G122100
[exp]
133.23 0.7026
AT4G12010 Disease resistance protein (TI... Potri.017G105201
[exp]
141.25 0.7108
AT2G35795 Chaperone DnaJ-domain superfam... Potri.008G043500
[exp]
152.83 0.7264

Potri.002G162600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.