Plant FIBer expression Database

ATSTE24.2 (Potri.002G162700) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol ATSTE24.2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G01320 758 / 0 ATSTE24 Peptidase family M48 family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G088900
[exp]
830 / 0 AT4G01320 757 / 0.0 Peptidase family M48 family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018820
[exp]
737 / 0 AT4G01320 719 / 0.0 Peptidase family M48 family protein (.1)
Lus10005123
[exp]
696 / 0 AT4G01320 675 / 0.0 Peptidase family M48 family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0126 Peptidase_MA PF01435 Peptidase_M48 Peptidase family M48
CL0126 PF16491 Peptidase_M48_N CAAX prenyl protease N-terminal, five membrane helices
Representative CDS sequence
>Potri.002G162700.1 pacid=42778650 polypeptide=Potri.002G162700.1.p locus=Potri.002G162700 ID=Potri.002G162700.1.v4.1 annot-version=v4.1
ATGGCGTTTCCTTACATGGAAGCTGTAGTTGGTTTTATGATACTCATGTATTTCTTTGAAACGTATTTGGATTTGCGACAACATGCTGCTTTGAAACTGC
CATCTCTCCCAAAAACTCTGGAAGGAGTAATCAGTCAAGAGAAGTTTGAAAAATCTCGAGCTTATAGTCTTGATAAAAGCTACTTCAATTTTGTTCATGA
ATTTGTTACTATACTTTTGGACTCCGCAATTTTGTTCTATGCGATATTGCCTTGGTTTTGGAAGAAATCTGGAAGCTTTCTGGTGTTGGTTGGTCTCGAT
GAGGAGAATGAAATATTCAACACCCTTGCTTTTTTGGCTGGTGTTATGATATGGTCACAGATTACAGATTTGCCATTCTCTCTCTATTCAACTTTTGTGA
TTGAGGCCCGCCATGGTTTCAATAAGCAAACAACATGGCTGTTCTTTAGAGACCTATTCAAGGGAATTTGCCTTTCCATTCTACTTGGTCCACCAATTGT
TTCAGCAATTATTTTAATAGTACAGAAAGGAGGCCCTTACCTGGCCATTTATCTATGGGCATTCATGTTTGTGCTTTCTCTTGTGATGATGACACTCTAC
CCAGTTTTAATAGCCCCACTTTTCAACAAGTTTACCCCTCTTCCAGAAGGAGAGCTCAGGGAGAAAATCGAGAAACTTGCTTTCTCTCTCAAGTTTCCTT
TAAAGAAGTTGTTTGTTGTAGATGGATCCACAAGGTCAAGCCATAGCAATGCCTATATGTATGGATTCTTTAAGAACAAGCGTATTGTCCTTTATGACAC
ATTGATTCAGCAGTGCAAAAATGATGAGGAAATTGTAGCTGTTATTGCCCATGAACTGGGGCACTGGAAACTCAATCATACAATGTACTCATTTATTGCT
GTGCAGATTCTTACTTTTTTACAATTTGGAGGATACACTCTTGTGAGGAACTCAACTGATCTCTTTCGAAGTTTTGGGTTTGATACACAGCCAGTGCTCA
TTGGACTTATCATATTTCAGCATACAGTAATACCTCTCCAACACCTTGTAAGCTTTGGTCTTAATCTAGTGAGTCGAGCTTTTGAATTTCAGGCTGATGC
TTTTGCAAAAAAGCTTGGTTATGGCTCTGCTCTTCGGGCTGGTCTTGTGAAACTACAGGAAGAAAATTTGTCATCTATGAATACAGATCCTTGGTACTCA
GCATATCACTATTCCCATCCTCCTCTTGTTGAAAGACTGGCAGCAATTGATGAAGCAGATAAGAAGGCTGACTAA
AA sequence
>Potri.002G162700.1 pacid=42778650 polypeptide=Potri.002G162700.1.p locus=Potri.002G162700 ID=Potri.002G162700.1.v4.1 annot-version=v4.1
MAFPYMEAVVGFMILMYFFETYLDLRQHAALKLPSLPKTLEGVISQEKFEKSRAYSLDKSYFNFVHEFVTILLDSAILFYAILPWFWKKSGSFLVLVGLD
EENEIFNTLAFLAGVMIWSQITDLPFSLYSTFVIEARHGFNKQTTWLFFRDLFKGICLSILLGPPIVSAIILIVQKGGPYLAIYLWAFMFVLSLVMMTLY
PVLIAPLFNKFTPLPEGELREKIEKLAFSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIA
VQILTFLQFGGYTLVRNSTDLFRSFGFDTQPVLIGLIIFQHTVIPLQHLVSFGLNLVSRAFEFQADAFAKKLGYGSALRAGLVKLQEENLSSMNTDPWYS
AYHYSHPPLVERLAAIDEADKKAD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G01320 ATSTE24 Peptidase family M48 family pr... Potri.002G162700
[exp]
0 1 ATSTE24.2
AT2G01720 Ribophorin I (.1) Potri.010G223500
[exp]
3.74 0.7562
AT3G12160 AtRABA4d ARABIDOPSIS THALIANA RAB GTPAS... Potri.001G270100
[exp]
4.00 0.7151 RAB11.15
AT4G24820 26S proteasome, regulatory sub... Potri.012G093500
[exp]
7.87 0.7331
AT1G76940 RNA-binding (RRM/RBD/RNP motif... Potri.002G070200
[exp]
11.95 0.6955 RBP1.2
AT1G79990 structural molecules (.1.2.3.4... Potri.001G179500
[exp]
12.84 0.6859
AT5G08060 unknown protein Potri.004G123700
[exp]
16.49 0.6850
AT1G17530 ATTIM23-1 translocase of inner mitochond... Potri.001G198100
[exp]
18.57 0.6753 ATTIM23.2
AT3G62120 Class II aaRS and biotin synth... Potri.014G112400
[exp]
19.36 0.7135
AT4G11060 MTSSB mitochondrially targeted singl... Potri.013G011800
[exp]
19.74 0.7151
AT5G15750 Alpha-L RNA-binding motif/Ribo... Potri.017G101200
[exp]
20.14 0.7024

Potri.002G162700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.