Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46100 286 / 5e-98 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2) AT3G04890 90 / 8e-22 Uncharacterized conserved protein (DUF2358) (.1), Uncharacterized conserved protein (DUF2358) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G036500 [exp] 88 / 8e-21 AT3G04890 242 / 2e-81 Uncharacterized conserved protein (DUF2358) (.1), Uncharacterized conserved protein (DUF2358) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007918 [exp] 308 / 8e-107 AT2G46100 289 / 2e-99 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2) Lus10036387 [exp] 297 / 2e-102 AT2G46100 283 / 8e-97 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2) Lus10015938 [exp] 78 / 5e-17 AT3G04890 223 / 8e-74 Uncharacterized conserved protein (DUF2358) (.1), Uncharacterized conserved protein (DUF2358) (.2) Lus10009193 [exp] 67 / 9e-13 AT3G04890 199 / 5e-64 Uncharacterized conserved protein (DUF2358) (.1), Uncharacterized conserved protein (DUF2358) (.2) Lus10019445 [exp] 41 / 0.0005 AT5G20140 422 / 3e-148 SOUL heme-binding family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0051 [poplar] [flax] NTF2 PF10184 [poplar] [flax] DUF2358 Uncharacterized conserved protein (DUF2358)
Representative CDS sequence Show only first row Show all	>Potri.002G162800.2 pacid=42777153 polypeptide=Potri.002G162800.2.p locus=Potri.002G162800 ID=Potri.002G162800.2.v4.1 annot-version=v4.1 ATGACAACCTCCCTCTCCTTTGCTTCCATCACTCCCCGTCTAAAATCCCACCACCACCACAGCATCATTTTTTCACCAAATTACAATGGCAAACTCAACA GAATTCGATGCAATGGAAAACGCCCATCAAGCAATTCTTCGTCCTCTAAACAAGAATCCGAACCAGAAAATGCACTGCTCAAGGTAGCTTGGTATAGCTC CGAGCTTCTAGGAATTGCCGCTTCATTTTTCCGTTCACCTTCCAATAGTAGCACTGAAGCTTCTGAAAAGGATATCAAACTTGGCAAAGATGTTTCGGGT GTCATTGATCGTGCTGTTGTAATGGAGACCATCAAAGAGGACTTCCAAAAATCGTATTTTGTCACAGGGAGCCTTACGCTTGAGGCATATGAAGAGAATT GTGAATTTGCCGATCCAGCTGGTTCCTTTAAAGGACTTCAACGTTTCAAACGGAACTGTACAAATTTTGGATTGCTTATAGAGAAGTCAAATATGAAACT TACGAAGTGGGAAGACTTTGAGGACAAGGGAATTGGACACTGGCGGTTCAGTTGTGTCATGTCATTTCCTTGGAAGCCCATTCTTTCTGCTACTGGATAC ACAGAATACTACTTTGACGAACAATCTGGAAGAGTATGCAGGCATGTGGAGCATTGGAATGTTCCCAAAATGGCACTGCTAAAGCAGCTTCTGAAGCCCA GCCAAGGTTTTTGGGGTGGTAGAAAAACAAGTGCTTGA
AA sequence Show only first row Show all	>Potri.002G162800.2 pacid=42777153 polypeptide=Potri.002G162800.2.p locus=Potri.002G162800 ID=Potri.002G162800.2.v4.1 annot-version=v4.1 MTTSLSFASITPRLKSHHHHSIIFSPNYNGKLNRIRCNGKRPSSNSSSSKQESEPENALLKVAWYSSELLGIAASFFRSPSNSSTEASEKDIKLGKDVSG VIDRAVVMETIKEDFQKSYFVTGSLTLEAYEENCEFADPAGSFKGLQRFKRNCTNFGLLIEKSNMKLTKWEDFEDKGIGHWRFSCVMSFPWKPILSATGY TEYYFDEQSGRVCRHVEHWNVPKMALLKQLLKPSQGFWGGRKTSA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G46100			Nuclear transport factor 2 (NT...		Potri.002G162800 [exp]	0	1
AT1G68830		STN7	STT7 homolog STN7 (.1)		Potri.008G116800 [exp]	1.73	0.9874
AT5G22620			phosphoglycerate/bisphosphogly...		Potri.004G187700 [exp]	1.73	0.9857
AT1G09130			ATP-dependent caseinolytic (Cl...		Potri.013G017166 [exp]	2.82	0.9871
AT1G07230		NPC1	non-specific phospholipase C1 ...		Potri.001G250500 [exp]	2.82	0.9805
AT1G02560		NCLPP5, NCLPP1,...	NUCLEAR CLPP 5, NUCLEAR-ENCODE...		Potri.014G119700 [exp]	3.46	0.9834
AT3G55400		OVA1	OVULE ABORTION 1, methionyl-tR...		Potri.010G207300 [exp]	3.74	0.9821
AT2G28800		ABL3, ALB3	ALBINO 3, 63 kDa inner membran...		Potri.001G237800 [exp]	4.00	0.9842	ALB3.2
AT3G63490		EMB3126	EMBRYO DEFECTIVE 3126, Ribosom...		Potri.001G262400 [exp]	5.47	0.9836	RPL1.2
AT3G09050			unknown protein		Potri.006G096700 [exp]	7.34	0.9802
AT5G41120			Esterase/lipase/thioesterase f...		Potri.001G324200 [exp]	8.30	0.9584

Compare expression of checked genes

Potri.002G162800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.