Plant FIBer expression Database

Potri.002G162900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G46090 492 / 3e-175 Diacylglycerol kinase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007917
[exp]
471 / 4e-167 AT2G46090 453 / 2e-160 Diacylglycerol kinase family protein (.1)
Lus10036388
[exp]
468 / 4e-166 AT2G46090 439 / 9e-155 Diacylglycerol kinase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0240 PFK PF00781 DAGK_cat Diacylglycerol kinase catalytic domain
Representative CDS sequence
>Potri.002G162900.1 pacid=42780048 polypeptide=Potri.002G162900.1.p locus=Potri.002G162900 ID=Potri.002G162900.1.v4.1 annot-version=v4.1
ATGGCGTGTTGCTATCAGGTTTCCTTGGGAGGAGGAATAGTGGCTGTGGCCGCATCTTCGTTTCCCGTTAATTCAAAATTAAAACCGTTTCCTGCTCTCA
AAGCAGAGCTTCCCAAACCCATGGCTTCTGATCTCTCTCCTGACCGTTCGATCTTCCACGATGCCTCCTCCTCTTCTCCCCGCCGCGACCTCGTTTTCAT
CGTTAATCCCCGAGGGGCTAATGGGAGGACAGGCAAGGATTGGAAGAAACTGCTTCCTTATCTCCGGTCACGGCTCGATAAAAATTGTAACATATGTGAA
TCTCTGACTTCAGGTCCATATCATGCAATTGACATTACAAGGGAGGCAATAAGGGAGGGTGCTGATGCTGTGGTTGCTGTTGGAGGTGATGGTACTCTTC
ACGAGGTTGTTAATGGATTCTTTTGGGCTGGGAAACCTGTCGCCAATCACAATAGAGAGGCTACACGTTCAACTGCTCTAGGTCTCATACCCTTAGGGAC
TGGGTCTGACTTTGCTAGAACATTGGGCTGGAAAAATGATCCTCGTGAAGCCATTGATCGAATTGCTGAAGGGCTGAGATCACCAGTAGATGTTGGTGTA
ATTACTGGAGAAAGTGAAGAAGAATCTCATTACTTCATAAATGTTGCTGATATTCATCTGAGTGCCAAGGCTGGTTACTTTGCATCACGATACAAGAGAT
TCGGAAACCTATGCTATGTTATAGGTGCTCTGCAAGCTTTTATGGGGCATAAAAACCAAGACCTTAGAATCAAGGTCAATGAAGGTGAGTGGGAAACATG
TTCTTTAGTGACAGCTCTTTGTATTGGAAATGCCAAGTACTTTGGGGGTGGCATGAAAATTACTCCAAATGCTGACCCTTCCAGTGGAAACTTTGAGGTT
GTGATTCTGCAGGACTTTAAGTGGTATGACTTCATTCTGAAGCTACATAGACTGTACAATGGGACACATTTATCAGTGAAGAATGTATCTTCAAGAAGTG
TATTTTCTATTGAAGTGGAGGACATTTCTGGCAGTGGAAGCATTTATGTTCAGTCTGATGGGGAACATTTAGGGTTTCTTCCCAGAAAGTTTTGTATTTT
GCCTTCTGCCATTCAGATGATATGCTGA
AA sequence
>Potri.002G162900.1 pacid=42780048 polypeptide=Potri.002G162900.1.p locus=Potri.002G162900 ID=Potri.002G162900.1.v4.1 annot-version=v4.1
MACCYQVSLGGGIVAVAASSFPVNSKLKPFPALKAELPKPMASDLSPDRSIFHDASSSSPRRDLVFIVNPRGANGRTGKDWKKLLPYLRSRLDKNCNICE
SLTSGPYHAIDITREAIREGADAVVAVGGDGTLHEVVNGFFWAGKPVANHNREATRSTALGLIPLGTGSDFARTLGWKNDPREAIDRIAEGLRSPVDVGV
ITGESEEESHYFINVADIHLSAKAGYFASRYKRFGNLCYVIGALQAFMGHKNQDLRIKVNEGEWETCSLVTALCIGNAKYFGGGMKITPNADPSSGNFEV
VILQDFKWYDFILKLHRLYNGTHLSVKNVSSRSVFSIEVEDISGSGSIYVQSDGEHLGFLPRKFCILPSAIQMIC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G46090 Diacylglycerol kinase family p... Potri.002G162900
[exp]
0 1
AT1G18440 Peptidyl-tRNA hydrolase family... Potri.012G061100
[exp]
2.64 0.7980
Potri.005G130601
[exp]
5.09 0.7882
AT5G61840 GUT1, IRX10-L Exostosin family protein (.1) Potri.015G116700
[exp]
5.38 0.7026
AT1G27070 5'-AMP-activated protein kinas... Potri.008G194300
[exp]
10.24 0.7459
AT5G23490 unknown protein Potri.004G133700
[exp]
11.31 0.7340
AT2G26930 CMK, CMEK, ISPE... PIGMENT DEFECTIVE 277, 4-\(cyt... Potri.009G021800
[exp]
12.24 0.7271
AT3G55960 Haloacid dehalogenase-like hyd... Potri.016G116700
[exp]
14.28 0.6924
AT1G09020 ATSNF4, SNF4 homolog of yeast sucrose nonfe... Potri.010G023500
[exp]
15.90 0.7268
AT5G52580 RabGAP/TBC domain-containing p... Potri.006G066300
[exp]
18.73 0.7278
AT4G04320 malonyl-CoA decarboxylase fami... Potri.011G010400
[exp]
23.66 0.7463

Potri.002G162900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.