Plant FIBer expression Database

Potri.002G163000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G01290 499 / 8e-160 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G089200
[exp]
1500 / 0 AT4G01290 501 / 1e-160 unknown protein
Potri.004G073400
[exp]
62 / 2e-09 AT4G01290 60 / 5e-09 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036389
[exp]
782 / 0 AT4G01290 483 / 4e-154 unknown protein
Lus10007916
[exp]
780 / 0 AT4G01290 507 / 3e-163 unknown protein
PFAM info
Representative CDS sequence
>Potri.002G163000.4 pacid=42777730 polypeptide=Potri.002G163000.4.p locus=Potri.002G163000 ID=Potri.002G163000.4.v4.1 annot-version=v4.1
ATGTACCTAAGCTTTAGCAGAATGAGTTTACCAAGTGAAGATCAACTTGGATCGAATCAGTACTTGGAAACAAGCAACGAACCACAAAAGAAGCTAAAAA
TTTCATATACAAGAAAATTTCTACTATCCCTGAGTGAATTGGATGTTTGCAAAAAATTACCAAGCGGGTTTGATGAACCATCTCTAAGTGAATTTGAGGA
CACTTCACAGGACCGATATAGAATTCCTGTCAGTTCATCATCACAAAGTTCTAGATGTAATGATAATAGTTCATCCCCACCCACTAGAGGGGACTCAAGT
AATTTTTTTCGAGGTATTCATGGAAGGTGGGATAGTCGTTCCTCTGGAAGGAGTGATCGAGACAGTGACTCTCAATCTGATTGGGATTCAGATTCTGGAA
GGCGTTACATTAACCAATCTCGGCGACCTTGGCAAGTACCTGAGCATGATGGACTTCTTGGAAGTGGTTCTTTTCCTAGACCATCTGCATATGCTGCAGG
GCCATCAGCTCCTAAGTCTCGATCTAACGATCAATTCCAGATCAATAGGAATAATGAGCCATATCAACCGCCTCGCCCTTATAAGGCAGGGCCTCATTTG
CGTAGGGAGACTAATGATTCACTTAATGATGAAACATTTGGTTCATCTGAATCCACAAGCGAGGACAGAGCAGAGGAGGAAAGAAAGAGAAGAGCTTCTT
TTGAATCAATGAGGAAAGAACAACATAAAGCTTTCCAAGAAAACCAGAAACCTGAAAAGTCTAAAGATAAGTTTGATTTTACCGAGTTACTGGAGGATTC
AAAAGATGATAAAAGACTTCTGAATAGAACCAATGAATTGGACAAGACTGTGATACAACCTATGCCAACTAATGAGCTTGATAAGCCTCTCCATCCCTCA
CAAGCTCCTGTACCTAGACCTCTTGTGCCTCCAGGATTTTCAAGCATGATAGCAGAGAAGAGTACGGGAACAAAATCTTTAACCAATCCTCTTCCTTCAG
AGGCTGGCAATGAACTTGAGCTAAGCCTTTTGCAAGCTAAAGGTACTTGTGTTTTAGACTGGACTTCAGATAATCAAGATGGAAAACAATCTTCAGAGGG
AATGCATTTGAATTTGCAACAGCCTAGAAACCCAATTGCTCATGTTTCCATTAATAACAAGAGCGAAAAGATTCTGAATATAGCATCAGTTTTGGATGTT
TCAAGTAAAAAAATTGGCTCCAAGACTTCAAATCTTTCAGAAGTCTTTATAGCTTCTGAGAATTGTGAAGTAATAGATCTTGATGCCGGGGATGTCACAG
GGGATAAAAATGTGGGTGACTCTGGTTCATCCCATTCAACCTCAATTCTAGACAAGCTTTTTGGCAGTGCTTTGACACTAAATGGTACTGCTTCTACTGG
TCCCTCCAGTTTCATTGAGCATCACGATGTTAAAGTAGATGACACATGGAGCCCTAAGACCGGTCAATCTTCCAAGTTTGCTCAGTGGTTTAGCGAAGAA
GAAAAGAAACCAGTCGACAATCTCCCATCTGGCAGGCCAAATGATTTGCTCTCACTAATTGTTGGTGGTGAAAAAGGTGGATCCCAGGTTAAAGCTACCG
ATCACATGCTGCCAACCTTTCCCTTCCAGAGCTCTGAACTTGAAGACAGGCATTTGTCATCAAATCTAAAGCCTGTCAGTGTTGAAAATAATGCGAAGAG
GTCCAACACTGATAAACCAGATGTAGTTCCAGCTGTACTTACATGTGAAGACCTTGAACAGTCTATTCTGTCAGAAATTACTGAGAATGGTTCAACTTTG
CTGCCACCTGTGCATGGCTGGAGTGGTGGTCATGTTAAGATTGAGCAGCAGAAAGCTGAATATCATGCATCCCAGCACCTTCTTTCATTGTTACAGAAGG
GGACAGGCCTGGATAATGCAGCACCATCTGCCAATCTAGGGATTAGTCAGATCAGTGTTGCAGACAGACTACAGAATACTGAAGTGGCAAATCCAAGCAA
TGCACCTCGCAAGCCGAGAGATGCAGATGCTGAAAACATTCCCAATCCAGGGAAGGCTTTGACTCTCGAAACACTTTTTGGAACTGCTTTCATGAAGGAA
CTGCAATCAGTAGGAGCACCTGTTTCTAGTCAAAGGGACTCTGTTGGACATGCAAATGATAACGCTTCAGAGTTTCATGGGCTACCCGTACCTGTAATAG
ATGATGGCTTCCTTCCTCCAGCTGAAATTGTGTTGAGCATGTCAAGTCACAGAAGTGGTGTCTTGGCATCAAAGCAAAGACAGCAAATTGTATCAGATAG
AACTGGAGAGCATTTGTTAGGCTTTGATCCTCAAAATGAAGTGGATTCATCACATCTTCGAACTGAACTGGGCTCTAAGATTGGTGGCTTTGATGGGTCT
GTTGAAATTCGACTTCCAGAAGAGGATAACTTGATTGCAGTCAGTGGCCCTCTGAATCTCCAAAACTTTCTACTTGCCAGGAATTCAGCTAAATCTGAGC
TATTACAGACTCCAGGAACATCAGTTGATATTGCTGAGAAACTTGCGGCTCTGAATTCTGGATTCAGGGACGAAAGACCTGTTGCAGGTCAAGAAGGTCA
ACCATTTCTTCGTGGTCCTTATGATATGAGGGAGCCTGATGCTCAGTTTCATAATCTCCATGTCCAGTCATCTTCTTCCCAGCTTCACCCCCCGCAGTTG
AATCATCCAGGGCCGATGTTCCATCCATTAGGTTCTCATCCTGCAAACATGAATGCTCAGATGAAATTAGTAGCCCCTGAGAACATTCATCACGATGCTC
CTAATAATCAATTCCCAGCAAATATGCTCCGCCCCCCTTTCAATCACCCCAGCCGCACACTGACTGGATTTGATCCTAGCACACATAAGTCTGTGTTACC
ACAAATGCACATGCATGGCAATTTTCCACCTGCTCACCTACAACGTGAATTTCCCAGAGGTGCACCTCTGCCTCCACATCCCAGCAATCAGGTGACTGGT
TTTATGCAGGAACCGGGTCCAATGCAGGGTTTCCCTTTTGGTCAAAGGCAGCCCAACTTTGGTGCCCTTGGAACTCCACCTCAAGCTATCGATGTTGGTG
GTGAAAGCCATCATCCGGAGGCACTCCAAAGGCTGATCGAGATGGAGCTCAGGTCAAAGTCCAAGCAAGCTCACCCTTTTGCCGCCTCAGGCAATGGTCC
AGGAATATACGGTCACGAGCTAGACATGGGTTTTGGATATAGATAG
AA sequence
>Potri.002G163000.4 pacid=42777730 polypeptide=Potri.002G163000.4.p locus=Potri.002G163000 ID=Potri.002G163000.4.v4.1 annot-version=v4.1
MYLSFSRMSLPSEDQLGSNQYLETSNEPQKKLKISYTRKFLLSLSELDVCKKLPSGFDEPSLSEFEDTSQDRYRIPVSSSSQSSRCNDNSSSPPTRGDSS
NFFRGIHGRWDSRSSGRSDRDSDSQSDWDSDSGRRYINQSRRPWQVPEHDGLLGSGSFPRPSAYAAGPSAPKSRSNDQFQINRNNEPYQPPRPYKAGPHL
RRETNDSLNDETFGSSESTSEDRAEEERKRRASFESMRKEQHKAFQENQKPEKSKDKFDFTELLEDSKDDKRLLNRTNELDKTVIQPMPTNELDKPLHPS
QAPVPRPLVPPGFSSMIAEKSTGTKSLTNPLPSEAGNELELSLLQAKGTCVLDWTSDNQDGKQSSEGMHLNLQQPRNPIAHVSINNKSEKILNIASVLDV
SSKKIGSKTSNLSEVFIASENCEVIDLDAGDVTGDKNVGDSGSSHSTSILDKLFGSALTLNGTASTGPSSFIEHHDVKVDDTWSPKTGQSSKFAQWFSEE
EKKPVDNLPSGRPNDLLSLIVGGEKGGSQVKATDHMLPTFPFQSSELEDRHLSSNLKPVSVENNAKRSNTDKPDVVPAVLTCEDLEQSILSEITENGSTL
LPPVHGWSGGHVKIEQQKAEYHASQHLLSLLQKGTGLDNAAPSANLGISQISVADRLQNTEVANPSNAPRKPRDADAENIPNPGKALTLETLFGTAFMKE
LQSVGAPVSSQRDSVGHANDNASEFHGLPVPVIDDGFLPPAEIVLSMSSHRSGVLASKQRQQIVSDRTGEHLLGFDPQNEVDSSHLRTELGSKIGGFDGS
VEIRLPEEDNLIAVSGPLNLQNFLLARNSAKSELLQTPGTSVDIAEKLAALNSGFRDERPVAGQEGQPFLRGPYDMREPDAQFHNLHVQSSSSQLHPPQL
NHPGPMFHPLGSHPANMNAQMKLVAPENIHHDAPNNQFPANMLRPPFNHPSRTLTGFDPSTHKSVLPQMHMHGNFPPAHLQREFPRGAPLPPHPSNQVTG
FMQEPGPMQGFPFGQRQPNFGALGTPPQAIDVGGESHHPEALQRLIEMELRSKSKQAHPFAASGNGPGIYGHELDMGFGYR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G01290 unknown protein Potri.002G163000
[exp]
0 1
AT5G38840 FHA SMAD/FHA domain-containing pro... Potri.004G111500
[exp]
1.41 0.9086
AT5G11530 EMF1 embryonic flower 1 (EMF1) (.1) Potri.006G240500
[exp]
4.00 0.8659
AT1G43850 SEU SEUSS transcriptional co-regul... Potri.005G186900
[exp]
4.00 0.9005
AT1G15780 unknown protein Potri.003G012400
[exp]
5.47 0.9005
AT3G06010 ATCHR12 Homeotic gene regulator (.1) Potri.008G149900
[exp]
6.32 0.8991
AT5G57580 Calmodulin-binding protein (.1... Potri.011G043200
[exp]
7.48 0.8701 CBP60.11
AT3G58560 DNAse I-like superfamily prote... Potri.006G195600
[exp]
10.09 0.8343
AT1G09710 MYB Homeodomain-like superfamily p... Potri.002G106500
[exp]
11.83 0.8924
AT4G12290 Copper amine oxidase family pr... Potri.001G118300
[exp]
12.12 0.8560
AT3G32940 RNA-binding KH domain-containi... Potri.001G008700
[exp]
13.41 0.8685

Potri.002G163000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.