Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	AN.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01510 815 / 0 AN ANGUSTIFOLIA, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G68010 61 / 9e-10 ATHPR1, HPR hydroxypyruvate reductase (.1.2) AT1G79870 59 / 5e-09 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) AT2G45630 56 / 4e-08 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) AT1G17745 45 / 0.0002 PGDH D-3-phosphoglycerate dehydrogenase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G089400 [exp] 981 / 0 AT1G01510 808 / 0.0 ANGUSTIFOLIA, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G183700 [exp] 64 / 6e-11 AT1G79870 404 / 3e-142 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.003G052700 [exp] 61 / 6e-10 AT1G79870 443 / 7e-158 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.004G175800 [exp] 61 / 1e-09 AT1G68010 660 / 0.0 hydroxypyruvate reductase (.1.2) Potri.014G073500 [exp] 59 / 3e-09 AT2G45630 377 / 4e-131 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007913 [exp] 926 / 0 AT1G01510 920 / 0.0 ANGUSTIFOLIA, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10036393 [exp] 893 / 0 AT1G01510 875 / 0.0 ANGUSTIFOLIA, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10025796 [exp] 73 / 1e-13 AT1G79870 466 / 1e-166 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10006708 [exp] 70 / 9e-13 AT1G12550 358 / 4e-124 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) Lus10035866 [exp] 69 / 3e-12 AT1G79870 466 / 6e-167 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10025795 [exp] 69 / 3e-12 AT1G79870 438 / 6e-156 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10014133 [exp] 69 / 3e-12 AT1G12550 340 / 1e-116 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) Lus10035867 [exp] 67 / 9e-12 AT1G79870 431 / 8e-153 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10019793 [exp] 65 / 8e-11 AT1G68010 709 / 0.0 hydroxypyruvate reductase (.1.2) Lus10014115 [exp] 66 / 9e-11 AT1G68010 700 / 0.0 hydroxypyruvate reductase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF02826 [poplar] [flax] 2-Hacid_dh_C D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
Representative CDS sequence Show only first row Show all	>Potri.002G163200.1 pacid=42780073 polypeptide=Potri.002G163200.1.p locus=Potri.002G163200 ID=Potri.002G163200.1.v4.1 annot-version=v4.1 ATGAGCGCCACGAATAATAGATCCTCAACGACAATGTCACTCCACCACCTTACCACCAACCCTCCTCCCCCACAACAAAATCTCCCTCTAGTCGTCACTC TCAACTGCATCGAAGATTGTGCCATCGAACAAGACTCCTTATCCGGCGTCGCTTCAATCGAACACGTTCCTCTCAGCCGTCTCTCCGGTGGCAAAATTGA ATCAGCGGCTGCCGTCCTCCTCCACTCCCTCGCTTACCTCCCACGCGCTGCCCAACGCCGTCTCCGTCCTTACCAGCTTATCCTATGCCTGGGATCGGCT GACCGAGCCGTCGACTCGGCTCTTGCTGCCGATTTAGGTCTCCGGCTTGTCCACGTTGACAATTCTCGAGCCGAGGAGATCGCGGACACGGTTATGGCTT TGTTTCTCGGCTTGCTTCGCCGGACGCACTTGTTATCAAGACATACGTTGTCAGCTTCCGGTTGGCTTGGCTCGGTACAGCCTCTTTGTAGAGGAATGAG GAGGTGTAGAGGTCTGGTATTGGGCATTGTTGGTAGATCTGCATCGGCTAAGTCTTTGGCTACTAGAAGCTTGGCTTTCAAAATAAGTGTGCTTTATTTT GATGTGCATGAGGGGCCAGGAATATTAAGCAGGTCTTCTATTGCATTTCCTTCAGCTGCTCGAAGAATGGATACTCTTAATGATTTGCTAGCTGCTAGTG ATCTTATTTCACTTCACTGTGCTTTAACTAATGAAACTGTTCAGATTATTAGTGCAGAGTGTTTGCAGCATATAAAGCCAGGGGCATTTCTTGTGAATAC GGGTAGCAGTCAGCTGCTGGATGATTGTGCTTTAAAGCAGCTTTTGATTGATGGGACCTTGGCTGGTTGTGCCTTGGATGGTGCTGAAGGACCACAGTGG ATGGAAGCATGGGTGAAAGAGATGCCCAATGTATTGATACTTCCACGCAGTGCAGATTACAGTGAAGAAGTGTGGATGGAGATAAGGGACAAAGCCATCT CTATACTGCAGTCATTCTTCCTTGATGGGACTGTACCAAAAAATGCCGTTTCTGACGAGGAAGAGGAAGAAAGTGAAATAGGTGAGGAAAGCGATCAATT TCACAGACAAGACAAAGAAAGTACCCTGCAGGATTCTGTTGTTGAGCAATTGACAGATGATGTTCAGGTAACACTAGAAAGCTATCACAAAAAAGTCATT AGTCAATCAATAGAATCTACCAGCAAAGCTCAGGTTTCTGGCATGTCTCAAAATATGGCCACAAGAACTGAAGGAAGACGGAACCGATTAGGCAAGAAGG CAAAAAAAAGACATGGCCATCAAAAATCCCAACAGAAATCAGATGATCCTTCTCAATTAGAGAAAGAAATTACTTCACATCAAGAAGATGATACTGCTAT GAGTGGCACTGATCAAGTGTTAAGTTCTGGTTCTCGGTTCGCATCCCCTGAAGACTCAAGGAGTAGGAAAACACCGATAGAATTAACGCAAGATCCAACT TCTGGCCAGCTTTCAAGATCAGGCAAGAAGCTCAGTGGAAAGTCTGACAAGCTTCTCAAAGATGGGCACATTATAGCTTTATATGCAAGAGATCACTCTG CACTCCATGTCTCCAGGCAAAGAGTTAAAGGAGGTGGCTGGTTCCTGGATGCTATGTCAAATGTGACGAAAAGAGACCCTGCAGCACAGTTCCTTGTTGT TTTCAGAAGCAAGGATACAATTGGGTTGCGCTCTTTTGCTGCTGGTGGAAAGTTATTGCAGATTAACAGAAGAACGGAATTTGTCTTTGCCAGTCACAGT TTTGATGTTTGGGAGAGTTGGATGTTGGAAGGTTCTTTGGAGGAATGCCGGCTGGTTAACTGTAGAAATCCTTTGGCTGTTTTGGAAGTACGCATTGAGA TTCTGGCAGCCGTGGGAGAAGATGGTGTTAGTCGTTGGCTAGATTAA
AA sequence Show only first row Show all	>Potri.002G163200.1 pacid=42780073 polypeptide=Potri.002G163200.1.p locus=Potri.002G163200 ID=Potri.002G163200.1.v4.1 annot-version=v4.1 MSATNNRSSTTMSLHHLTTNPPPPQQNLPLVVTLNCIEDCAIEQDSLSGVASIEHVPLSRLSGGKIESAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSA DRAVDSALAADLGLRLVHVDNSRAEEIADTVMALFLGLLRRTHLLSRHTLSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASAKSLATRSLAFKISVLYF DVHEGPGILSRSSIAFPSAARRMDTLNDLLAASDLISLHCALTNETVQIISAECLQHIKPGAFLVNTGSSQLLDDCALKQLLIDGTLAGCALDGAEGPQW MEAWVKEMPNVLILPRSADYSEEVWMEIRDKAISILQSFFLDGTVPKNAVSDEEEEESEIGEESDQFHRQDKESTLQDSVVEQLTDDVQVTLESYHKKVI SQSIESTSKAQVSGMSQNMATRTEGRRNRLGKKAKKRHGHQKSQQKSDDPSQLEKEITSHQEDDTAMSGTDQVLSSGSRFASPEDSRSRKTPIELTQDPT SGQLSRSGKKLSGKSDKLLKDGHIIALYARDHSALHVSRQRVKGGGWFLDAMSNVTKRDPAAQFLVVFRSKDTIGLRSFAAGGKLLQINRRTEFVFASHS FDVWESWMLEGSLEECRLVNCRNPLAVLEVRIEILAAVGEDGVSRWLD

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G01510		AN	ANGUSTIFOLIA, NAD(P)-binding R...		Potri.002G163200 [exp]	0	1	AN.1
AT2G20760			Clathrin light chain protein (...		Potri.004G040100 [exp]	5.29	0.8891
AT3G18480		AtCASP	CCAAT-displacement protein alt...		Potri.012G061000 [exp]	7.28	0.8938
AT5G16730			Plant protein of unknown funct...		Potri.013G079000 [exp]	15.32	0.8890
AT3G16630		ATKINESIN-13A, ...	P-loop containing nucleoside t...		Potri.010G013500 [exp]	16.00	0.8935
AT1G60780		HAP13	HAPLESS 13, Clathrin adaptor c...		Potri.008G187600 [exp]	19.82	0.8928
AT2G27060			Leucine-rich repeat protein ki...		Potri.004G197500 [exp]	22.44	0.8811
AT3G16760			Tetratricopeptide repeat (TPR)...		Potri.010G007000 [exp]	24.65	0.8636
AT3G17440		ATNPSN13, NPSN1...	novel plant snare 13 (.1.2)		Potri.010G001900 [exp]	28.28	0.8394	NPSN12.1
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.001G157700 [exp]	30.74	0.8778
AT5G19780		TUA5	tubulin alpha-5 (.1)		Potri.003G220300 [exp]	33.67	0.8015	TUA2

Compare expression of checked genes

Potri.002G163200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.