Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01500 354 / 1e-122 Erythronate-4-phosphate dehydrogenase family protein (.1) AT1G19400 212 / 4e-67 Erythronate-4-phosphate dehydrogenase family protein (.1.2) AT1G75180 189 / 3e-58 Erythronate-4-phosphate dehydrogenase family protein (.1.2.3) AT4G24110 45 / 2e-05 unknown protein AT5G04790 0 / 1 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G089600 [exp] 551 / 0 AT1G01500 355 / 3e-123 Erythronate-4-phosphate dehydrogenase family protein (.1) Potri.002G260900 [exp] 216 / 1e-68 AT1G75180 348 / 2e-120 Erythronate-4-phosphate dehydrogenase family protein (.1.2.3) Potri.009G115800 [exp] 204 / 3e-64 AT1G75180 310 / 2e-105 Erythronate-4-phosphate dehydrogenase family protein (.1.2.3) Potri.001G082500 [exp] 51 / 2e-07 AT4G24110 135 / 1e-38 unknown protein Potri.003G147800 [exp] 45 / 2e-05 AT4G24110 108 / 2e-28 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007912 [exp] 362 / 1e-125 AT1G01500 350 / 1e-120 Erythronate-4-phosphate dehydrogenase family protein (.1) Lus10005124 [exp] 347 / 4e-120 AT1G01500 360 / 3e-125 Erythronate-4-phosphate dehydrogenase family protein (.1) Lus10036394 [exp] 308 / 4e-105 AT1G01500 295 / 4e-100 Erythronate-4-phosphate dehydrogenase family protein (.1) Lus10018819 [exp] 278 / 2e-92 AT1G01500 303 / 3e-102 Erythronate-4-phosphate dehydrogenase family protein (.1) Lus10016311 [exp] 187 / 3e-57 AT1G75180 353 / 2e-122 Erythronate-4-phosphate dehydrogenase family protein (.1.2.3) Lus10010803 [exp] 185 / 1e-56 AT1G75180 357 / 1e-123 Erythronate-4-phosphate dehydrogenase family protein (.1.2.3) Lus10042323 [exp] 161 / 1e-47 AT1G19400 238 / 3e-77 Erythronate-4-phosphate dehydrogenase family protein (.1.2) Lus10026339 [exp] 158 / 2e-46 AT1G19400 234 / 6e-76 Erythronate-4-phosphate dehydrogenase family protein (.1.2) Lus10017328 [exp] 47 / 1e-05 AT4G24110 168 / 3e-51 unknown protein Lus10001676 [exp] 44 / 7e-05 AT4G24110 165 / 4e-50 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G163300.1 pacid=42780171 polypeptide=Potri.002G163300.1.p locus=Potri.002G163300 ID=Potri.002G163300.1.v4.1 annot-version=v4.1 ATGGATCAAAACTACAACGAATCACATTCCTACAACAATCTAATAACGAACAAATCATCTTCATGGCTCGAAGTCCGGTTATTCTACGTAAGAGTAACTC CTTGCGTCATCGAAAGCGTACCAGGCCACCTAACCCTTCGCCATCTCGGTCGTTCAATCAGCACTCCACTTGAAATCAACGGCTCAAAAATCCCCGCTGC TGATTCCGCCACCTTAACCCTCCGTCGCGACCGCCTCAACAAGGAATTGTCAGAGGTCACGTATGTTAGCACGGACAGCGTGCGAGTCACCTGCGGGGTT GAATTCGAAGTATTGGATAACAAGGATATGGTTTTGTGTGGGTCGTTGGAGAGGATTGAAACGACATCGTGGGGGAATAATGGGAGTGTAGGGGGGTTGG AGAATGATGCGAAGACAGGGTGGTGCTTAGAGTGCTGTTTGGCGACTGGTGTTTTTGAAGGGAAATCGGTGTTTAAATTGGGGGTTTCGGCGCCCGTGAT CGAGGTTTATATTGCTGGTTGTTGTGGAGGTGTTCCGGTGATTTTGACGAAGACCATTTTGGTTAGTCCGAGGAAGAAAGCTTCTAGGTATGCGATGCTT GATGCGATTCCAGAGGATGAGGAGCTGGACAATAGGAAGCAAAATGGTGTTATTAGTAATGAGTTGGTTCGACAACGCAAAGTTCAGATTACTGAAGCCG AAGGTGATGATGGCTATGATTCAGATGAGAAAATCGGAAACAGATACTACTCACAAGACATGTATTATGGTGAGGATGGACAACTTTCATGGTTTAATGC TGGTGTGAGAGTTGGTGTTGGAATTGGCCTTGGGATGTGCCTTGGTGTTGGCATTGGTGTTGGACTGCTTATGCGCTCTTATCAAGCAACTACCCGGAAT TTTAGGAGGAGGTTTTTCTGA
AA sequence Show only first row Show all	>Potri.002G163300.1 pacid=42780171 polypeptide=Potri.002G163300.1.p locus=Potri.002G163300 ID=Potri.002G163300.1.v4.1 annot-version=v4.1 MDQNYNESHSYNNLITNKSSSWLEVRLFYVRVTPCVIESVPGHLTLRHLGRSISTPLEINGSKIPAADSATLTLRRDRLNKELSEVTYVSTDSVRVTCGV EFEVLDNKDMVLCGSLERIETTSWGNNGSVGGLENDAKTGWCLECCLATGVFEGKSVFKLGVSAPVIEVYIAGCCGGVPVILTKTILVSPRKKASRYAML DAIPEDEELDNRKQNGVISNELVRQRKVQITEAEGDDGYDSDEKIGNRYYSQDMYYGEDGQLSWFNAGVRVGVGIGLGMCLGVGIGVGLLMRSYQATTRN FRRRFF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G01500			Erythronate-4-phosphate dehydr...		Potri.002G163300 [exp]	0	1
AT1G10280			Core-2/I-branching beta-1,6-N-...		Potri.003G001700 [exp]	14.49	0.6584
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.005G046100 [exp]	17.83	0.6862
AT3G56680			Single-stranded nucleic acid b...		Potri.016G032500 [exp]	20.71	0.6776
AT3G07360		ATPUB9	ARABIDOPSIS THALIANA PLANT U-B...		Potri.013G052200 [exp]	23.68	0.5982
AT4G14660		NRPE7	RNA polymerase Rpb7-like, N-te...		Potri.010G077300 [exp]	34.05	0.6643
AT4G14420			HR-like lesion-inducing protei...		Potri.002G040900 [exp]	37.46	0.6307
AT1G17370		UBP1B	oligouridylate binding protein...		Potri.003G069000 [exp]	40.58	0.6518
AT5G60850	DOF	OBP4, AtDof5. 4	OBF binding protein 4 (.1)		Potri.012G063800 [exp]	41.95	0.5828
AT3G18210			2-oxoglutarate (2OG) and Fe(II...		Potri.008G125800 [exp]	48.08	0.5667
AT1G49170			Protein of unknown function (D...		Potri.005G056500 [exp]	53.85	0.5998

Compare expression of checked genes

Potri.002G163300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.