Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ACS1.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61510 684 / 0 AT-ACS1, ACS1 ARABIDOPSIS THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 1, ACC synthase 1 (.1) AT1G01480 651 / 0 AT-ACC2, ACS2 1-amino-cyclopropane-1-carboxylate synthase 2 (.1.2) AT4G11280 636 / 0 ATACS6, ACS6 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1) AT4G37770 527 / 0 ACS8 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) AT4G26200 515 / 0 ACS7, ATACS7 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) AT4G08040 513 / 4e-180 ACS11 1-aminocyclopropane-1-carboxylate synthase 11 (.1) AT3G49700 510 / 6e-179 AtACS9, ACS9, ETO3 ETHYLENE OVERPRODUCING 3, 1-aminocyclopropane-1-carboxylate synthase 9 (.1) AT2G22810 504 / 2e-176 ACC4, ACS4, ATACS4 1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID SYNTHASE POLYPEPTIDE, 1-aminocyclopropane-1-carboxylate synthase 4 (.1) AT5G65800 499 / 7e-175 CIN5, ETO2, ACS5, ATACS5 ETHYLENE OVERPRODUCER 2, CYTOKININ-INSENSITIVE 5, ACC synthase 5 (.1) AT5G51690 365 / 1e-121 ACS12 1-amino-cyclopropane-1-carboxylate synthase 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G099400 [exp] 678 / 0 AT4G11280 656 / 0.0 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1) Potri.003G132300 [exp] 665 / 0 AT4G11280 659 / 0.0 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1) Potri.006G149600 [exp] 533 / 0 AT4G26200 651 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Potri.007G007800 [exp] 531 / 0 AT4G37770 749 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Potri.014G012600 [exp] 528 / 0 AT4G37770 755 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Potri.018G067000 [exp] 525 / 0 AT4G26200 676 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Potri.002G113900 [exp] 514 / 0 AT4G37770 682 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Potri.015G132100 [exp] 385 / 3e-129 AT5G51690 676 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 12 (.1) Potri.003G117700 [exp] 382 / 1e-127 AT1G62960 664 / 0.0 ACC synthase 10 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007910 [exp] 725 / 0 AT3G61510 659 / 0.0 ARABIDOPSIS THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 1, ACC synthase 1 (.1) Lus10036396 [exp] 723 / 0 AT3G61510 660 / 0.0 ARABIDOPSIS THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 1, ACC synthase 1 (.1) Lus10017521 [exp] 634 / 0 AT4G11280 643 / 0.0 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1) Lus10024673 [exp] 597 / 0 AT1G01480 610 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 2 (.1.2) Lus10032301 [exp] 594 / 0 AT1G01480 609 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 2 (.1.2) Lus10028760 [exp] 549 / 0 AT4G11280 570 / 0.0 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1) Lus10032695 [exp] 533 / 0 AT4G26200 659 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Lus10008579 [exp] 531 / 0 AT4G26200 664 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Lus10011565 [exp] 528 / 0 AT4G37770 740 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Lus10007223 [exp] 506 / 2e-177 AT4G37770 747 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [poplar] [flax] PLP_aminotran PF00155 [poplar] [flax] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Potri.002G163700.1 pacid=42776794 polypeptide=Potri.002G163700.1.p locus=Potri.002G163700 ID=Potri.002G163700.1.v4.1 annot-version=v4.1 ATGGAGAGGCAGCACCAACTTTTGTCCAAGATTGCAACGAATGATAGACATGGAGAGAACTCCCCATATTTTGATGGATGGAAAGCTTACGATAAAAACC CTTTTCACCCTACTGACAACCCCGATGGAGTAATACAAATGGGTCTAGCAGAAAATCAGCTTTCCGCTGATTCGATTATAGACTGGATCAAGAAACATCC CAAAGCCTCCATTTGCAATCCTGAAGGAGTTCATATGTTCAAGGATATTGCTAACTTTCAGGATTATCATGGCCTGCCAGAGTTTCGACAGGCTATTGCG AAGTTTATGGGGAGAGTTAGAGGAGGAAGGGTGACATTTGATCCAGATCGCATAGTCATGAGCGGTGGAGCAACTGGAGCAAACGAGCTGATCATGTTTT GCCTGGCCGATCCCGGGGATGCTTTCCTTGTTCCTTCTCCTTACTATCCTGCATTCTATCGAGACCTGGGATGGCGCACCGGGGTCCAGATTGTTCCAGT TGACTGCGATAGCTCAAACAATTTCCAGATCACAAAAGTTGCGCTGGAAGCAGCATATGATAAGGCACAACAGGATGGCATCAATGTCAAAGGCTTAATC ATAACAAACCCATCTAATCCACTTGGCACCACCTTGGACAGAGAGACACTAAAGTGCCTCTTGAGCTTCATCAATGAGAAAAACATACACATAGTCTGCG ATGAAATTTATGCAGCGACCATCTTCAGCTCCCAGAATTTCGTAAGCGTTTCTGAGGTTATAGAAGAGGTCGTGGATTGCAACCGTGACCTCATTCACAT TGTTTACAGTCTGTCCAAGGACATGGGACTCCCTGGCTTCAGAGTTGGAATTGTTTACTCATACAACGATGCAGTTGTTAATTGCGGCCGAAAGATGTCA AGTTTTGGGCTGGTCTCCTCACAAACTCAATATTTACTTGCTTCAATGCTTTCTGATGAAGAGTTTGTCGAGGATTTCCTAGCCGAGAGCTCGAAGAGGC TAAAGAAAAGGCACGGTATTTTCACAAAGGGATTGGAACAAATTGGGATCAGTTGTTTGGAAAGCAAAGCCGGTCTCTTTGTTTGGATGAATTTGCGCCA TCTCCTTAAGGAACAAACAAATGATGGTGAGATGGCACTGTGGCGTGTGATCGTTAATGACGTGAAGCTAAATGTTTCGCCAGGCTCTTCCTTCCATTGC GTTGAGCCTGGTTGGTTTAGGGTCTGCTTCGCCAATATGGATGATGAAACTCTGGAAGTTGCACTGAAAAGAATAAACGCATTTGTCGGTGAACAAAAGG AAAGGGATACATTGTCAACGAAAACCAAGGATATGCCATCAAAGACCAAGTGCTGGAAGAAGAATCTTCGGCTCAGCTTCTCATCTCGTATATTTGAAGA GGGTATTGGATCTCCAATTGCGATGTCTCCTCACTCGCCGCTTGTTCTAGCAAGGACTTAA
AA sequence Show only first row Show all	>Potri.002G163700.1 pacid=42776794 polypeptide=Potri.002G163700.1.p locus=Potri.002G163700 ID=Potri.002G163700.1.v4.1 annot-version=v4.1 MERQHQLLSKIATNDRHGENSPYFDGWKAYDKNPFHPTDNPDGVIQMGLAENQLSADSIIDWIKKHPKASICNPEGVHMFKDIANFQDYHGLPEFRQAIA KFMGRVRGGRVTFDPDRIVMSGGATGANELIMFCLADPGDAFLVPSPYYPAFYRDLGWRTGVQIVPVDCDSSNNFQITKVALEAAYDKAQQDGINVKGLI ITNPSNPLGTTLDRETLKCLLSFINEKNIHIVCDEIYAATIFSSQNFVSVSEVIEEVVDCNRDLIHIVYSLSKDMGLPGFRVGIVYSYNDAVVNCGRKMS SFGLVSSQTQYLLASMLSDEEFVEDFLAESSKRLKKRHGIFTKGLEQIGISCLESKAGLFVWMNLRHLLKEQTNDGEMALWRVIVNDVKLNVSPGSSFHC VEPGWFRVCFANMDDETLEVALKRINAFVGEQKERDTLSTKTKDMPSKTKCWKKNLRLSFSSRIFEEGIGSPIAMSPHSPLVLART

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G61510		AT-ACS1, ACS1	ARABIDOPSIS THALIANA 1-AMINOCY...		Potri.002G163700 [exp]	0	1	Pt-ACS1.3
AT4G37760		SQE3	squalene epoxidase 3 (.1)		Potri.012G121320 [exp]	1.00	0.9972
AT2G41380			S-adenosyl-L-methionine-depend...		Potri.006G042200 [exp]	2.00	0.9942
AT5G57510			unknown protein		Potri.018G094100 [exp]	3.87	0.9940
AT3G49780		ATPSK3(FORMERSY...	phytosulfokine 4 precursor (.1...		Potri.014G014000 [exp]	4.24	0.9872
AT5G44440			FAD-binding Berberine family p...		Potri.011G158100 [exp]	4.89	0.9887
					Potri.018G091032 [exp]	5.29	0.9831
AT5G36160			Tyrosine transaminase family p...		Potri.017G014200 [exp]	6.70	0.9908
AT1G11925			Stigma-specific Stig1 family p...		Potri.004G006900 [exp]	6.70	0.9820
AT4G18540			unknown protein		Potri.011G064300 [exp]	6.92	0.9935
					Potri.006G008132 [exp]	13.41	0.9797

Compare expression of checked genes

Potri.002G163700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.