Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01270 122 / 9e-31 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G089800 [exp] 294 / 2e-95 AT4G01270 381 / 8e-127 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005127 [exp] 152 / 2e-41 AT4G01270 352 / 1e-115 RING/U-box superfamily protein (.1) Lus10018817 [exp] 144 / 3e-38 AT4G01270 360 / 2e-118 RING/U-box superfamily protein (.1) Lus10005126 [exp] 71 / 3e-13 AT4G01270 179 / 1e-51 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G164000.2 pacid=42777916 polypeptide=Potri.002G164000.2.p locus=Potri.002G164000 ID=Potri.002G164000.2.v4.1 annot-version=v4.1 ATGATCACAAACCCTAACAACTCTTTCGCGAAGACAATCTGCTATGAAGATCTCAAGCCCATTATCGAAGATCTCCAATCAATCTCCATCTGCGGCCACG TCTATCACGAAATCTGTTTGCAAGCAGAATTGCTCGGCTCAGGATGGCGGTCGCCTTTATTCTCATTCTGTTGGGGATGGGGTGAGGAGGATTCGGAGTT GTTGCGTGGAGAAGTGGAGAGATTGGAAGGAATATTTTTGGTTCTCAATACGATTTTGGAGCGTCAAGTGAAGGAAATCAAGCAGCTCAATGAGGAATTA TATCTCTGTAAAGATGAGTTGAAGAGACAAGTTAAATCGATGATTGATTCAATGGAACAAAAAGCATCGATTCTACACCTGATTCGATTGAAATCTGAGG AGCTTGATGCACTGAAGCTGGAGAGTATTAGGCTGCATGATAGGAACGTGGCACTCACCAAAGAGCTTGTAGCACTCAAGCTGGTATCAGATGTGAATTT GGAGGAAGACGAGGTTTTAAAGCCTGCATCTTTTGGTATTGAAGCCAATAACATAGATACCGTGGACATTATAAGGAAGTCTGTGGTCATTCTAATAAGG GTGAGGCTTGTTTTTGTAAAAGACTCGAGAAGGCAAAAGATCAATAAATTGAAGACAAGGGTCCAAGAACTAAAGATTGTTGTTGAAGTAAAAGATAATG GAACTTTGAGGGCTTTAAAAGCGCCAAAGAAGACAAAATGCAAAGGGATCGTCACAGAGGGTATTAAGGATAATTCTAGTGCTTTGTCCACCAGTGTTTC ATCAATCGGTATAAAGGAACAGCAGACCCACCTAACTGCAATCAACAATGATAACTGCAATACTCTTGATTCTGCTACAGACCAGGAAGTTACTGCATCT CATGATGACATCAGAGAAGTTTGGCCCATCCTCAACATTAGAAAAGACTCTCTGTCACCAGCTCCTCTTGCCAGACCAGTTAATTTACTAGCGGTGCCAT TTGAGTTTGATGTAACTGGTTTCAAGGAGTGGCTTGAACCAAACTTTGTGGTATAA
AA sequence Show only first row Show all	>Potri.002G164000.2 pacid=42777916 polypeptide=Potri.002G164000.2.p locus=Potri.002G164000 ID=Potri.002G164000.2.v4.1 annot-version=v4.1 MITNPNNSFAKTICYEDLKPIIEDLQSISICGHVYHEICLQAELLGSGWRSPLFSFCWGWGEEDSELLRGEVERLEGIFLVLNTILERQVKEIKQLNEEL YLCKDELKRQVKSMIDSMEQKASILHLIRLKSEELDALKLESIRLHDRNVALTKELVALKLVSDVNLEEDEVLKPASFGIEANNIDTVDIIRKSVVILIR VRLVFVKDSRRQKINKLKTRVQELKIVVEVKDNGTLRALKAPKKTKCKGIVTEGIKDNSSALSTSVSSIGIKEQQTHLTAINNDNCNTLDSATDQEVTAS HDDIREVWPILNIRKDSLSPAPLARPVNLLAVPFEFDVTGFKEWLEPNFVV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G01270			RING/U-box superfamily protein...		Potri.002G164000 [exp]	0	1
AT1G20760			Calcium-binding EF hand family...		Potri.007G063200 [exp]	2.44	0.8563
AT2G27760		IPPT, ATIPT2	tRNAisopentenyltransferase 2 (...		Potri.009G147600 [exp]	3.74	0.8375
AT1G33390		ATFAS4	FASCIATED STEM 4, RNA helicase...		Potri.002G201400 [exp]	4.24	0.8395
AT1G55350		EMB80, ATDEK1, ...	EMBRYO DEFECTIVE 80, embryo de...		Potri.003G221100 [exp]	5.19	0.8549
AT1G05830		SDG30, ATX2	SET DOMAIN PROTEIN 30, trithor...		Potri.002G232800 [exp]	6.70	0.8342
AT5G64420			DNA polymerase V family (.1)		Potri.009G079900 [exp]	8.36	0.8202
AT3G49725			GTP-binding protein, HflX (.1)		Potri.007G007700 [exp]	8.94	0.8357
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Potri.002G024100 [exp]	10.00	0.8283	XRN2.1
AT2G36720			Acyl-CoA N-acyltransferase wit...		Potri.016G097300 [exp]	10.39	0.8520
AT1G55350		EMB80, ATDEK1, ...	EMBRYO DEFECTIVE 80, embryo de...		Potri.001G003900 [exp]	11.00	0.8229

Compare expression of checked genes

Potri.002G164000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.