Plant FIBer expression Database

Potri.002G164100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G12370 1296 / 0 SEC10 exocyst complex component sec10 (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G090100
[exp]
1500 / 0 AT5G12370 1286 / 0.0 exocyst complex component sec10 (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007908
[exp]
1384 / 0 AT5G12370 1330 / 0.0 exocyst complex component sec10 (.1.2.3)
Lus10036398
[exp]
1314 / 0 AT5G12370 1255 / 0.0 exocyst complex component sec10 (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0294 Sec10 PF07393 Sec10 Exocyst complex component Sec10
Representative CDS sequence
>Potri.002G164100.4 pacid=42778585 polypeptide=Potri.002G164100.4.p locus=Potri.002G164100 ID=Potri.002G164100.4.v4.1 annot-version=v4.1
ATGAAGGATAGTATAGATGGAATCAGGAGCAATAGAAATTCAAAATCTTCGTCAGTTGCCTCTCTTCCACTCATTCTGGATATAGATGATTTCAAGGGTG
ATTTTTCGTTTGATGCATTATTTGGGAACTTGGTAAATGATCTACTCCCATCTTTCCAAGATGAAGAAGCAGATTCAGCTGATGGTGTCGGTGGGAGTGA
TGTTATAGCAACTGGACATGCAAGAGCCCCATCTGATGCAGCAAAATTGGCGCAAGGCTTGTCTTCTCCCTTATTTCCTGAAGTGGATAGTCTTTTGTCT
TTGTTTCGGGATTCTTGTAGGGAGTTGATAGACCTCCGAAAACAGATTGATGGAAGGCTCTACAATCTCAAGAAGGAGGTTTCTGTCCAAGATTCCAAGC
ACCGTAAAACACTTGCTGAGCTGGAAAAAGGTGTAGATGGCTTGTTTGATAGCTTTGCAAGGCTTGACACACGTATTTCAAGTGTTGGACAGACTGCTGC
CAAAATAGGAGACCATTTGCAGAGTGCAGATGCTCAGAGGGAAACAGCTAGTCAAACAATAGAGCTCATAAAGTACATGATGGAATTCAATGGCAGCCCA
GGTGACTTAATGGAACTTTCACCTCTGTTTTCGGATGACAGCCGTGTTGCTGAGGCGGCTTCAATTGCGCAGAAGTTACGGTCATTTGCTGAGGAAGATA
TTGGAAGACAAGACTTAACTGTAACATCAGTCATGGGAAATGCAACTGCAAGCCGAGGATTAGAAGTTGCAGTCACTAATCTTCAGGACTACTGCAATGA
ACTGGAGAATAGATTGTTGGCTCGGTTTGATGCAGCATCACAGAAACGAGAATTATCTACCATGGCAGAATGTGCAAAATTTTTATCTCAGTTCAACAGG
GGCACTAGCGCCATGCAACATTATGTGGCAACACGTCCAATGTTCATTGATGTGGAAGTCATGAATGCAGACTCTAGATTGGTTCTTGGTGATCAGGGTT
CTCAAGCTAGTCCTAGCAATGTTGCTCGTGGACTCTCTTCCTTGTTCAAAGAAATCACAGACACTGTCCGTAAAGAAGCAGCTACAATTATGGCAGTATT
CCCATCTCCTAATGATGTCATGTCCATTTTGGTTCAGAGAGTTTTAGAGCAACGAGTTACAGCTCTTTTAGATAAATTGTTAGTGAAACCATCTCTTGTG
AATTTACCTCCCATGGAAGAAGGCGGACTTTTATTATATCTCAGAATGCTAGCGGTGGCATATGAGAAGACTCAGGAACTTGCAAGAGACCTGCGAGCTG
TTGGATGTGGTGACTTGGATGTTGAGGGCCTCACAGAGTCTCTTTTCTCTTCTCACAAGGATGAATATCCTGAACATGAGCAGGCCTCTCTTAGACAACT
ATACCAAGCTAAGATGGAAGAACTGCGTGCTGAGAGCCAGCAGCCTTCTGAATCAACTGGGACTATTGGGCGCTCAAAAGGGGCTTCTGCAGCATCTTCC
CACCAGCAGATATCTGTTACTGTTGTGACAGAATTTGTGCGGTGGAATGAGGAAGCAATATCAAGATGCACTTTGTTTTCATCTCTGCCTGCTACCCTTG
CAGCCAATGTGAAAGCAGTGTTCACTTGCTTGCTAGACCAAGTAGGGCAATATATAACAGAAGGTCTTGAACGAGCTAGAGATGGTCTCACTGAAGCTGC
AACTTTAAGAGAACGGTTTGTGCTGGGAACGAGTGTTAGTAGAAGGGTGGCTGCTGCAGCTGCTTCTGCTGCAGAGGCTGCTGCTGCTGCTGGTGAGAGC
AGTTTCAGATCTTTCATGGTTGCTGTACAACGGTGTGGAAGTAGTGTGGCTATAGTACAGCAATGTTTTGCAAATTCTATATCTCGCCTTTTACTACCTG
TGGATGGTGCACATGCTGCTTCATGTGAAGAAATGGCAACAGCTATGTCCACTGCAGAGGCTGCAGCATATAAAGGGCTTCAACAGTGCATTGAAACAGT
TATGGCTGAGGTAGAGCGATTGCTACCAGCTGAACAAAAGGCAACAGATTATAGGTCACCTGATGATGGAATGGCTCCTGACCATCGTCCAACAAATGCT
TGCACAAAAGTTGTGGCATATCTTTCACGTGTGCTTGAGGCTGCATTCACTGCATTGGAAGGTCTTAACAAACAAGCATTCCTCACGGAATTGGGAAATC
GCTTGCACAAGGGGCTGCTGAATCATTGGCAGAAGTTCACTTTTAATCCCAGTGGAGGATTGCGGTTGAAACGTGATATAACTGAGTATGGAGAATTTGT
GCGAAGTTTTAATGCCCCTTCTGTTGATGAGAAGTTTGAGTTGTTGGGCATAATGGCCAATGTCTTTATTGTTGCTCCTGAAAGTCTTTCCACTTTGTTC
GAGGGTACCCCCAGCATACGCAAAGATGCACAAAGGTTTATTCAGCTTAGAGAGGACTACAAGAGTGCTAAACTTGCATCAAGACTTGGTTCCCTTGTGG
ACAAGCTCTAG
AA sequence
>Potri.002G164100.4 pacid=42778585 polypeptide=Potri.002G164100.4.p locus=Potri.002G164100 ID=Potri.002G164100.4.v4.1 annot-version=v4.1
MKDSIDGIRSNRNSKSSSVASLPLILDIDDFKGDFSFDALFGNLVNDLLPSFQDEEADSADGVGGSDVIATGHARAPSDAAKLAQGLSSPLFPEVDSLLS
LFRDSCRELIDLRKQIDGRLYNLKKEVSVQDSKHRKTLAELEKGVDGLFDSFARLDTRISSVGQTAAKIGDHLQSADAQRETASQTIELIKYMMEFNGSP
GDLMELSPLFSDDSRVAEAASIAQKLRSFAEEDIGRQDLTVTSVMGNATASRGLEVAVTNLQDYCNELENRLLARFDAASQKRELSTMAECAKFLSQFNR
GTSAMQHYVATRPMFIDVEVMNADSRLVLGDQGSQASPSNVARGLSSLFKEITDTVRKEAATIMAVFPSPNDVMSILVQRVLEQRVTALLDKLLVKPSLV
NLPPMEEGGLLLYLRMLAVAYEKTQELARDLRAVGCGDLDVEGLTESLFSSHKDEYPEHEQASLRQLYQAKMEELRAESQQPSESTGTIGRSKGASAASS
HQQISVTVVTEFVRWNEEAISRCTLFSSLPATLAANVKAVFTCLLDQVGQYITEGLERARDGLTEAATLRERFVLGTSVSRRVAAAAASAAEAAAAAGES
SFRSFMVAVQRCGSSVAIVQQCFANSISRLLLPVDGAHAASCEEMATAMSTAEAAAYKGLQQCIETVMAEVERLLPAEQKATDYRSPDDGMAPDHRPTNA
CTKVVAYLSRVLEAAFTALEGLNKQAFLTELGNRLHKGLLNHWQKFTFNPSGGLRLKRDITEYGEFVRSFNAPSVDEKFELLGIMANVFIVAPESLSTLF
EGTPSIRKDAQRFIQLREDYKSAKLASRLGSLVDKL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G12370 SEC10 exocyst complex component sec1... Potri.002G164100
[exp]
0 1
AT3G17310 DRM3, AtDRM3 domains rearranged methyltrans... Potri.010G152200
[exp]
2.44 0.8655
AT1G55860 UPL1 ubiquitin-protein ligase 1 (.1... Potri.007G102500
[exp]
3.60 0.8215
AT3G49660 AtWDR5a human WDR5 \(WD40 repeat\) hom... Potri.015G026100
[exp]
4.24 0.8557
AT1G75850 VPS35B VPS35 homolog B (.1) Potri.002G019400
[exp]
5.47 0.8649
AT3G24740 Protein of unknown function (D... Potri.002G216600
[exp]
7.74 0.8481
AT5G40640 unknown protein Potri.001G338900
[exp]
9.48 0.8300
AT1G50730 unknown protein Potri.001G356700
[exp]
9.48 0.8184
AT3G04580 EIN4 ETHYLENE INSENSITIVE 4, Signal... Potri.013G044100
[exp]
10.86 0.7803 Pt-EIN4.3
AT1G09330 ECHIDNA, ECH unknown protein Potri.002G191700
[exp]
14.31 0.7901
AT5G51980 C3HZnF Transducin/WD40 repeat-like su... Potri.014G077800
[exp]
14.49 0.8267

Potri.002G164100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.