Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01250 244 / 5e-79 WRKY ATWRKY22, WRKY22 WRKY family transcription factor (.1) AT5G52830 162 / 5e-47 WRKY ATWRKY27, WRKY27 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY DNA-binding protein 27 (.1) AT4G23550 155 / 1e-44 WRKY ATWRKY29, WRKY29 WRKY family transcription factor (.1) AT2G34830 150 / 1e-41 WRKY ATWRKY35, WRKY35, MEE24 maternal effect embryo arrest 24, WRKY DNA-binding protein 35 (.1) AT1G30650 146 / 5e-40 WRKY ATWRKY14, AR411, WRKY14 WRKY DNA-binding protein 14 (.1) AT5G45050 141 / 1e-36 WRKY ATWRKY16, TTR1 TOLERANT TO TOBACCO RINGSPOT NEPOVIRUS 1, Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT1G29280 127 / 2e-34 WRKY ATWRKY65, WRKY65 WRKY DNA-binding protein 65 (.1) AT3G58710 121 / 6e-32 WRKY ATWRKY69, WRKY69 RABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 69, WRKY DNA-binding protein 69 (.1.2) AT2G30590 112 / 6e-28 WRKY WRKY21 WRKY DNA-binding protein 21 (.1) AT2G24570 107 / 2e-26 WRKY ATWRKY17, WRKY17 WRKY DNA-binding protein 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G090300 [exp] 505 / 0 AT4G01250 250 / 1e-81 WRKY family transcription factor (.1) Potri.001G099001 [exp] 176 / 1e-52 AT4G01250 138 / 2e-38 WRKY family transcription factor (.1) Potri.003G132700 [exp] 171 / 3e-50 AT4G01250 121 / 5e-32 WRKY family transcription factor (.1) Potri.004G072000 [exp] 168 / 4e-48 AT5G52830 182 / 2e-53 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY DNA-binding protein 27 (.1) Potri.017G149000 [exp] 167 / 5e-48 AT5G52830 192 / 2e-57 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY DNA-binding protein 27 (.1) Potri.011G157100 [exp] 157 / 6e-44 AT1G30650 305 / 1e-99 WRKY DNA-binding protein 14 (.1) Potri.001G460600 [exp] 155 / 4e-43 AT1G30650 322 / 2e-106 WRKY DNA-binding protein 14 (.1) Potri.011G070100 [exp] 119 / 2e-31 AT1G29280 237 / 3e-78 WRKY DNA-binding protein 65 (.1) Potri.004G060900 [exp] 119 / 3e-31 AT1G29280 247 / 3e-82 WRKY DNA-binding protein 65 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007907 [exp] 240 / 1e-76 AT4G01250 228 / 2e-72 WRKY family transcription factor (.1) Lus10036399 [exp] 209 / 3e-66 AT4G01250 207 / 2e-66 WRKY family transcription factor (.1) Lus10038426 [exp] 155 / 8e-45 AT2G34830 252 / 1e-81 maternal effect embryo arrest 24, WRKY DNA-binding protein 35 (.1) Lus10039295 [exp] 154 / 8e-44 AT5G52830 170 / 4e-50 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY DNA-binding protein 27 (.1) Lus10027538 [exp] 154 / 4e-43 AT5G52830 171 / 1e-49 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY DNA-binding protein 27 (.1) Lus10032303 [exp] 144 / 3e-40 AT4G01250 171 / 1e-51 WRKY family transcription factor (.1) Lus10024676 [exp] 139 / 8e-39 AT4G01250 163 / 7e-49 WRKY family transcription factor (.1) Lus10018815 [exp] 140 / 3e-37 AT4G01250 149 / 4e-41 WRKY family transcription factor (.1) Lus10026936 [exp] 119 / 1e-30 AT4G31550 409 / 1e-143 WRKY DNA-binding protein 11 (.1.2) Lus10007305 [exp] 115 / 1e-30 AT1G29280 164 / 9e-51 WRKY DNA-binding protein 65 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03106 [poplar] [flax] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Potri.002G164400.4 pacid=42778045 polypeptide=Potri.002G164400.4.p locus=Potri.002G164400 ID=Potri.002G164400.4.v4.1 annot-version=v4.1 ATGGAGGATATTGATTGGGATCTTCATGCTGTGGTCAGAGGCTGCACCACCTCTACCTCCACATCCACCACAGCCACAACCACCATCAACAGCAACAGCA ACAGAAACGGCACTACGAGTGGTTATAGATCAGATTATTATCCTCAATATTCTTGCTTTTCTGGTTTTGGCAGTGAGCAAGTTGGCCATCTTTTCTCTCA TCCAGATCCCTTTGAAACAAGAAATGTTATTGGAGAACTGGATGAGCTTTACAAGCCATTTTTCCCCAAAACTCAGCCCCTCCTTTATTCTCCACAAGCC TGCACACCTATCTCTTCGTTTTCTTCGTTTGCCAGTTTTAACAAGGATTTACAAACCCAGCCAAAACAACAGCAAAAAAAGTCACAGCCTAAGCAGTCTC TTGCCGGTTCTGTGACTAGCAGTGGAAATTCTCACACACCTCGATCCAAAAGAAGAAAGAACCAGTTAAAGAAAGTATGCCAAGTACCAGCAGAGGCTCT ATCTTCAGATGTGTGGGCATGGCGTAAATATGGGCAAAAACCAATCAAAGGCTCTCCATATCCAAGGGGCTATTACAGATGCAGCAGCTCAAAAGGGTGT TTGGCCCGGAAACAAGTGGAGAGAAACAGATCCGACCCAGGAATGTTCATAGTGACGTACACAGCAGAGCACAACCACCCTGCCCCTACACACAGAAACT CTCTAGCAGGTAGCACGCGTCAGAAGACCTCAACACCACAAGCTGGTACATCTAACGATTCTAACAAACCATCATCGCCAGCCCAACCCACTTGCTCATC TCCAGCAACTTCCCTGGAAGATGAGCTACTAGTTCAAAGTACTACGGACACAGAATTAAGCAGAGAAGAGAAAGATATAACGGAAGACGACGATGAAGAT GAGCTTGCTGGATTCTCAGAGATAGCTGTTAGTGATGATTTCTTTGCGGGTTTGGAGGAATTTGTTGTTCCGGCTACCGGATTTTTCTCTGATCATTTTC CTGCAAGTTTTGGTCTGCCTTGGCATGCTAACAATAATGCTGCCACGGCAGCCGGAAGTATCTGA
AA sequence Show only first row Show all	>Potri.002G164400.4 pacid=42778045 polypeptide=Potri.002G164400.4.p locus=Potri.002G164400 ID=Potri.002G164400.4.v4.1 annot-version=v4.1 MEDIDWDLHAVVRGCTTSTSTSTTATTTINSNSNRNGTTSGYRSDYYPQYSCFSGFGSEQVGHLFSHPDPFETRNVIGELDELYKPFFPKTQPLLYSPQA CTPISSFSSFASFNKDLQTQPKQQQKKSQPKQSLAGSVTSSGNSHTPRSKRRKNQLKKVCQVPAEALSSDVWAWRKYGQKPIKGSPYPRGYYRCSSSKGC LARKQVERNRSDPGMFIVTYTAEHNHPAPTHRNSLAGSTRQKTSTPQAGTSNDSNKPSSPAQPTCSSPATSLEDELLVQSTTDTELSREEKDITEDDDED ELAGFSEIAVSDDFFAGLEEFVVPATGFFSDHFPASFGLPWHANNNAATAAGSI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G01250	WRKY	ATWRKY22, WRKY2...	WRKY family transcription fact...		Potri.002G164400 [exp]	0	1
AT4G01250	WRKY	ATWRKY22, WRKY2...	WRKY family transcription fact...		Potri.014G090300 [exp]	1.41	0.8274	Pt-WRKY22.2
					Potri.008G087700 [exp]	2.44	0.8314
AT5G18150			Methyltransferase-related prot...		Potri.013G058200 [exp]	5.29	0.7334
AT4G01700			Chitinase family protein (.1)		Potri.014G111800 [exp]	6.48	0.8173	CHI2.1
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Potri.001G330501 [exp]	10.24	0.7640
AT4G13730			Ypt/Rab-GAP domain of gyp1p su...		Potri.001G316700 [exp]	12.84	0.7277
AT3G23640		HGL1	heteroglycan glucosidase 1 (.1...		Potri.001G129600 [exp]	16.06	0.7643
AT3G47570			Leucine-rich repeat protein ki...		Potri.006G099100 [exp]	17.23	0.7477
AT4G33420			Peroxidase superfamily protein...		Potri.004G134800 [exp]	19.59	0.7889
AT2G17820		AHK1, ATHK1	histidine kinase 1 (.1)		Potri.005G111700 [exp]	24.24	0.7387	ATHK1.3

Compare expression of checked genes

Potri.002G164400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.