Plant FIBer expression Database

Potri.002G164700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G61540 666 / 0 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G090601
[exp]
455 / 1e-159 AT3G61540 353 / 2e-119 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010141
[exp]
699 / 0 AT3G61540 690 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Lus10001877
[exp]
697 / 0 AT3G61540 684 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0028 AB_hydrolase PF00561 Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence
>Potri.002G164700.1 pacid=42778039 polypeptide=Potri.002G164700.1.p locus=Potri.002G164700 ID=Potri.002G164700.1.v4.1 annot-version=v4.1
ATGTATGAAACTAGCTCCCTCGCCGACTCTACGCCGGATCATGTCGCCGGAACATGGTACTCGGTGCCGGACCTCCGCCTTCGCGACCACCGATTCACTG
TCCCTCTCGATTATTCCATCGATCGCAATGCTTCTCCTAAAATCTCCGTTTTCGCTCGCGAAGTCGTTTCCGTTGGGAAAGAAGAACAACTGCTGCCATA
CCTATTATATCTACAAGGGGGGCCGGGTTTCGAGTGCCCAAGGCCGACTGAGGCGAGTGGGTGGATACATAAAACATGTGAAGAATTCCGTGTTATTTTG
ATGGACCAGCGAGGAACAGGGTTATCAACTCCTTTGACACCATCATCCATGTCACAATTGGGTTCTGCGGAGGAGATTGCTGAATATTTGAAATACTTTA
GAGCTGACAATATAGTGAATGATGCTGAGTTTATCCGAGTTCGTCTTGTTCCTGAAGCTGGACCGTGGACAGTTTTGGGTCAGAGCTATGGTGGCTTTTG
TTCAGTAACCTATTTGAGCTTTGCACCACAAGGGCTAAAACAGGTCCTTCTAACTGGAGGAATCCCTCCTGTAGGAAATGGATCCACTGCAGATGCTGTC
TATAGAGCATGCTATCCTCAGGTTATTCACCAGAATGAAAAGTACTACAAGAGGTTTCCTCAGGATGTTGAAATTGTTCGTGAAGTTGTGAAACATTTGG
CAGAATCTGAAGGAGGCGGGGTGCCTCTTCCATCAGGAGGATTCTTAACCCCAAGAGGACTGCAAATTCTTGGTCTCTCTGGTTTAGGATCCAGTTCTGG
TTTTGAGCGTTTGCACTACATGTTTGAAAGGGCATGGGATCCTGTAATAGTTCCAGGATCTCGCAAGCAAATCAGCTATTACTTCTTGAAAGCCTTTGAG
AATTGGCTAGATTTTGATACAAACCCACTCTACGCTCTCCTGCATGAGTCCATATATTGTCAGGGTGATTCATCGCTGTGGTCTGCTCACAGGATACGGA
TTGAGGATGATGGTATATTTGATGCAATCAGGGCTGTCAAAGAAGGTCGCCCTGTATTTTTCACAGGAGAGATGGTGTTCCCATGGATGTTCGAAGAATT
TCATGCCTTGAGCAAATTTAAAGATGCTGCTCATTTATTGGCTGAGAAGAAAGATTGGCCTCCTCTATATGACATTGCTGTGCTGAATAATAACAAGGTA
CCTGTTGCAGCTGCTGTTTATTATGAAGATATGTATGTTAATTTCAAGTTGGCAATGGAGACAGCTTCTCAGGTAGCTGGAATTAGGCTATGGATAACCA
ACGAATACATGCATTCTGGTCTGCGAGATGGAGGGGGGCAGGTTCTTGATCATTTGTTGGGGATGTTAAATGGAAGAAAGCCGTTGTTCTGA
AA sequence
>Potri.002G164700.1 pacid=42778039 polypeptide=Potri.002G164700.1.p locus=Potri.002G164700 ID=Potri.002G164700.1.v4.1 annot-version=v4.1
MYETSSLADSTPDHVAGTWYSVPDLRLRDHRFTVPLDYSIDRNASPKISVFAREVVSVGKEEQLLPYLLYLQGGPGFECPRPTEASGWIHKTCEEFRVIL
MDQRGTGLSTPLTPSSMSQLGSAEEIAEYLKYFRADNIVNDAEFIRVRLVPEAGPWTVLGQSYGGFCSVTYLSFAPQGLKQVLLTGGIPPVGNGSTADAV
YRACYPQVIHQNEKYYKRFPQDVEIVREVVKHLAESEGGGVPLPSGGFLTPRGLQILGLSGLGSSSGFERLHYMFERAWDPVIVPGSRKQISYYFLKAFE
NWLDFDTNPLYALLHESIYCQGDSSLWSAHRIRIEDDGIFDAIRAVKEGRPVFFTGEMVFPWMFEEFHALSKFKDAAHLLAEKKDWPPLYDIAVLNNNKV
PVAAAVYYEDMYVNFKLAMETASQVAGIRLWITNEYMHSGLRDGGGQVLDHLLGMLNGRKPLF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G61540 alpha/beta-Hydrolases superfam... Potri.002G164700
[exp]
0 1
AT5G25800 Polynucleotidyl transferase, r... Potri.002G073300
[exp]
6.00 0.8542
AT1G71090 Auxin efflux carrier family pr... Potri.008G127700
[exp]
6.32 0.8509
AT5G26830 Threonyl-tRNA synthetase (.1) Potri.010G096500
[exp]
7.61 0.8767 Pt-THRRS.2
AT2G04340 unknown protein Potri.014G169750
[exp]
13.19 0.8079
AT1G43770 RING/FYVE/PHD zinc finger supe... Potri.007G110400
[exp]
13.52 0.8514
AT2G30000 PHF5-like protein (.1) Potri.008G028300
[exp]
14.49 0.8036
AT1G47550 SEC3A exocyst complex component sec3... Potri.002G131400
[exp]
14.49 0.8483
AT5G11800 ATKEA6, KEA6 K+ efflux antiporter 6, ARABID... Potri.018G054100
[exp]
16.24 0.8439 ATKEA4.2
AT1G53840 ATPME1 pectin methylesterase 1 (.1) Potri.001G162700
[exp]
16.43 0.8108
Potri.004G111750
[exp]
16.91 0.8300

Potri.002G164700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.