Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46130 172 / 7e-56 WRKY ATWRKY43, WRKY43 WRKY DNA-binding protein 43 (.1.2) AT5G41570 172 / 1e-54 WRKY ATWRKY24, WRKY24 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 24, WRKY DNA-binding protein 24 (.1) AT1G64000 170 / 7e-54 WRKY ATWRKY56, WRKY56 WRKY DNA-binding protein 56 (.1) AT5G13080 142 / 1e-43 WRKY ATWRKY75, WRKY75 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) AT3G01970 119 / 2e-34 WRKY ATWRKY45, WRKY45 WRKY DNA-binding protein 45 (.1) AT2G44745 118 / 3e-33 WRKY WRKY12 WRKY family transcription factor (.1) AT1G69310 117 / 3e-32 WRKY ATWRKY57, WRKY57 WRKY DNA-binding protein 57 (.1.2) AT4G18170 115 / 5e-31 WRKY ATWRKY28, WRKY28 WRKY DNA-binding protein 28 (.1) AT1G29860 112 / 3e-30 WRKY ATWRKY71, WRKY71 WRKY DNA-binding protein 71 (.1) AT5G49520 114 / 5e-30 WRKY ATWRKY48, WRKY48 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G090700 [exp] 294 / 7e-103 AT2G46130 169 / 2e-54 WRKY DNA-binding protein 43 (.1.2) Potri.001G058800 [exp] 149 / 7e-46 AT5G13080 171 / 2e-55 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Potri.003G169100 [exp] 145 / 2e-44 AT5G13080 168 / 2e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Potri.017G066860 [exp] 143 / 3e-43 AT5G13080 178 / 1e-57 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Potri.001G328000 [exp] 142 / 7e-43 AT5G13080 174 / 2e-56 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Potri.015G099200 [exp] 139 / 8e-42 AT5G13080 154 / 2e-48 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Potri.002G138900 [exp] 123 / 2e-35 AT2G44745 224 / 9e-75 WRKY family transcription factor (.1) Potri.014G050000 [exp] 123 / 6e-35 AT2G44745 224 / 5e-74 WRKY family transcription factor (.1) Potri.008G103300 [exp] 120 / 1e-32 AT5G49520 170 / 3e-49 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007906 [exp] 209 / 9e-69 AT1G64000 168 / 6e-54 WRKY DNA-binding protein 56 (.1) Lus10036401 [exp] 206 / 9e-68 AT1G64000 170 / 1e-54 WRKY DNA-binding protein 56 (.1) Lus10012547 [exp] 147 / 6e-46 AT5G13080 172 / 2e-56 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Lus10011346 [exp] 142 / 3e-43 AT5G13080 179 / 1e-58 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Lus10003128 [exp] 142 / 4e-43 AT5G13080 179 / 2e-58 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Lus10041546 [exp] 137 / 7e-41 AT5G13080 171 / 1e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Lus10017067 [exp] 119 / 4e-32 AT5G49520 184 / 2e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Lus10004612 [exp] 115 / 2e-31 AT1G29860 188 / 3e-58 WRKY DNA-binding protein 71 (.1) Lus10037785 [exp] 116 / 4e-31 AT5G49520 179 / 4e-53 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Lus10004537 [exp] 110 / 1e-29 AT1G29860 188 / 1e-58 WRKY DNA-binding protein 71 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03106 [poplar] [flax] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Potri.002G164900.1 pacid=42779124 polypeptide=Potri.002G164900.1.p locus=Potri.002G164900 ID=Potri.002G164900.1.v4.1 annot-version=v4.1 ATGGAAGGCCATGAAGCCCCACCACCACCACCACAACTGCCACAACTGGCGCCATCCCCAAACCCTTCCTATCTCCTTACACCCTTACTACTGCCATCCT CCTCATTGCAGTACCCTTCTATAATTGAACCTCAAGTCCTTCCGGATATTGATTGGGTTGGCCTTCTCTCTGGCCAATCCCAGCTCGGCGAGAAGAGGCC TGTAATGGAAAGTGCTTCTATGGTGGCTGAAAATGGAGCAGAGGAAGAAAGGGGAAATAAAGATGAGAAGAAAGGGGGAAGAATGAAAAAGGCGACCCGG CCAAGATTTGCTTTCCAAACTAGAAGTGCAGACGATATTCTTGATGATGGATATAGGTGGAGGAAATATGGGCAAAAAGCCGTGAAGAACAGCAAATATC CCAGGAGTTACTACCGGTGCACGCATCATACATGCAACGTGAAGAAACAAGTGCAAAGGCTATCTAAGGACACAAGCATAGTCGTCACGACTTATGAAGG AGTTCATGATCATCCATGTGAGAAACTGATGGAAACCCTAACTCCTCTTCTCAAACAGATGCAATTCCTTGCTAGGTTCTAA
AA sequence Show only first row Show all	>Potri.002G164900.1 pacid=42779124 polypeptide=Potri.002G164900.1.p locus=Potri.002G164900 ID=Potri.002G164900.1.v4.1 annot-version=v4.1 MEGHEAPPPPPQLPQLAPSPNPSYLLTPLLLPSSSLQYPSIIEPQVLPDIDWVGLLSGQSQLGEKRPVMESASMVAENGAEEERGNKDEKKGGRMKKATR PRFAFQTRSADDILDDGYRWRKYGQKAVKNSKYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGVHDHPCEKLMETLTPLLKQMQFLARF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G46130	WRKY	ATWRKY43, WRKY4...	WRKY DNA-binding protein 43 (....		Potri.002G164900 [exp]	0	1
AT2G46130	WRKY	ATWRKY43, WRKY4...	WRKY DNA-binding protein 43 (....		Potri.014G090700 [exp]	5.83	0.9438
AT5G06090		ATGPAT7, GPAT7	glycerol-3-phosphate acyltrans...		Potri.008G058200 [exp]	7.00	0.9447
AT5G20230		SAG14, ATBCB	SENESCENCE ASSOCIATED GENE 14,...		Potri.018G129400 [exp]	7.34	0.9385
AT5G09520		PELPK2	Pro-Glu-Leu|Ile|Val-Pro-Lys 2,...		Potri.007G114700 [exp]	14.00	0.9300
AT3G18400	NAC	ANAC058	NAC domain containing protein ...		Potri.015G046800 [exp]	14.89	0.9312
AT3G05950			RmlC-like cupins superfamily p...		Potri.011G162600 [exp]	15.49	0.8669	Pt-GER2.26
AT2G37360		ABCG2	ATP-binding cassette G2, ABC-2...		Potri.014G080200 [exp]	16.00	0.9350
AT1G04520		PDLP2	plasmodesmata-located protein ...		Potri.013G048200 [exp]	17.74	0.9330
AT1G54540			Late embryogenesis abundant (L...		Potri.017G154000 [exp]	17.88	0.9262
AT3G25640			Protein of unknown function, D...		Potri.008G114500 [exp]	19.05	0.9250

Compare expression of checked genes

Potri.002G164900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.