Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01240 662 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G05390 451 / 6e-156 unknown protein AT5G40830 257 / 5e-81 ATRAD3, ATATR S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G27230 248 / 2e-77 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G29790 207 / 2e-62 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G00750 54 / 1e-07 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G43200 49 / 5e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G10440 48 / 2e-05 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G04430 47 / 2e-05 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G33170 47 / 2e-05 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G019400 [exp] 463 / 8e-161 AT3G05390 753 / 0.0 unknown protein Potri.004G116900 [exp] 384 / 1e-129 AT4G01240 388 / 7e-129 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.004G231100 [exp] 282 / 3e-90 AT3G05390 287 / 2e-92 unknown protein Potri.017G135100 [exp] 276 / 2e-88 AT3G05390 278 / 3e-89 unknown protein Potri.004G083800 [exp] 272 / 1e-86 AT3G05390 278 / 3e-89 unknown protein Potri.005G236600 [exp] 253 / 1e-79 AT3G27230 634 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G024800 [exp] 252 / 5e-79 AT3G27230 600 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G352700 [exp] 206 / 7e-62 AT1G29790 437 / 2e-153 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.011G079000 [exp] 195 / 9e-58 AT1G29790 439 / 2e-154 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010138 [exp] 695 / 0 AT4G01240 620 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10004494 [exp] 449 / 4e-155 AT3G05390 699 / 0.0 unknown protein Lus10029907 [exp] 442 / 2e-152 AT3G05390 697 / 0.0 unknown protein Lus10035135 [exp] 363 / 2e-121 AT4G01240 367 / 1e-120 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10031968 [exp] 359 / 1e-119 AT4G01240 372 / 2e-122 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10020803 [exp] 270 / 7e-86 AT5G40830 282 / 1e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10007385 [exp] 264 / 1e-83 AT5G40830 277 / 1e-89 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10034506 [exp] 243 / 1e-75 AT3G27230 599 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10033164 [exp] 236 / 4e-71 AT3G27230 451 / 3e-155 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10024318 [exp] 226 / 4e-69 AT3G27230 581 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03141 [poplar] [flax] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Potri.002G165300.1 pacid=42779142 polypeptide=Potri.002G165300.1.p locus=Potri.002G165300 ID=Potri.002G165300.1.v4.1 annot-version=v4.1 ATGACCAAACCTAACATTTCAGTGAAGCTAGGAAGATGGGGTGGGGTTCGCAGGCCAATCTTTATTCTTGGTATTTTAGCTCTCTTGGTCTCTATTGCTA CTTTGTCCAAATTCTACTCTATTAGATCTCTTTTTATTTCTGATACGTTCTGCAGTCATGTTAATATTGAGTATCAAGGCGGATTTCAGAGTGAACCAGG CATAGCTGTCGAAACTATTGTTAGCAAGATCCAGAAAGAAATGAATGAGATGAGAGATATGCCAATAGACTCTTCGTCAGCAGAAACAATAGTGTCAAGA TACAGTGCTTTTCTTGCTGATATTTTGGGACTTATTGAGTCATTACAGACAACTGGAAATCCCCAGGAAAACAGTGAAATCAGAGCTGTCCATCCTCTAG TAGGACGAAAACAACAGTCGGATGAACCTGCAAAGTTCTTTCTGATTGAAGAGATCCGCAAGTATGTAAGGATCAAACCCAACCGTTTAGGCAAACAGAA CTTCATGGGAGCTAATGGAACGTTCACGAGCATTGGCCATGCTTGTTTTGCAATGAAGAAAGATATTGAAGAATATATGGATTATGATGTAGGTGAAATC TGCAAAGATGATTGGAAGCTAGCTCAAAAGCTGATGGTTCATGGATGTGATCCGTTACCGAGGAGGAGGTGCTTTGCAAGGGCCCCGCAGCTATACAGCA AGCCATTCCCCATCAACGAGTCCATGTGGAAGCTTCCTGACAATCGAAATGTCCGGTGGAGCCAGTACAGATGCAAAAACTTCACTTGCCTAGCTAGCAA TACAACTCGCAAGGGATTCTTTAAGTGTGCAGATTGCTTCAATCTGTCGGACCATGAATTGCCAAGATGGATCAAACAAGTGATTTCTGACCCCGAGATG AATCTTACAGCAGATTTTCTGATACCTGAAGTGCTAAACATCAAACTAGGAGAGATCAGAATAGGATTGGATTTCAGTGTAGGAACTGGGACTTTTGCAG CAAGAATGAGAGAGTTTAATGTCACAATAGTCTCAGCAACCATTAATCTTGGTGCCCCTTTTAACGAAATGATTGCACTTCGGGGACTTGTACCTCTATA CTTGACTATAAATCAACGGCTTCCATTCTTTGACAATACCCTGGATTTGTTACACACCACAAGGTTTCTTGATGGATGGATAGATTTTGTGCTCCTGGAT TTTATACTGTACGATTGGGATAGGGTCTTGAGGCCAGGAGGTTTGCTTTGGATCGACAGCTTTTTCTGTTTGAAAGAGGACTTGGATGATTATTTGGAAG CCTTTAAGATGCTGAGTTACAGGAGGCATAAATGGATTGTTGTTCCAAAGCTGGACAAGGATGATCGAGAAGTTTTCTTCTCTGCTGTGCTAGAGAAGCC GCCAAGACCATTTCGTTAA
AA sequence Show only first row Show all	>Potri.002G165300.1 pacid=42779142 polypeptide=Potri.002G165300.1.p locus=Potri.002G165300 ID=Potri.002G165300.1.v4.1 annot-version=v4.1 MTKPNISVKLGRWGGVRRPIFILGILALLVSIATLSKFYSIRSLFISDTFCSHVNIEYQGGFQSEPGIAVETIVSKIQKEMNEMRDMPIDSSSAETIVSR YSAFLADILGLIESLQTTGNPQENSEIRAVHPLVGRKQQSDEPAKFFLIEEIRKYVRIKPNRLGKQNFMGANGTFTSIGHACFAMKKDIEEYMDYDVGEI CKDDWKLAQKLMVHGCDPLPRRRCFARAPQLYSKPFPINESMWKLPDNRNVRWSQYRCKNFTCLASNTTRKGFFKCADCFNLSDHELPRWIKQVISDPEM NLTADFLIPEVLNIKLGEIRIGLDFSVGTGTFAARMREFNVTIVSATINLGAPFNEMIALRGLVPLYLTINQRLPFFDNTLDLLHTTRFLDGWIDFVLLD FILYDWDRVLRPGGLLWIDSFFCLKEDLDDYLEAFKMLSYRRHKWIVVPKLDKDDREVFFSAVLEKPPRPFR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G01240			S-adenosyl-L-methionine-depend...		Potri.002G165300 [exp]	0	1
AT2G18196			Heavy metal transport/detoxifi...		Potri.001G452400 [exp]	1.00	0.8869
AT1G10155		ATPP2-A10	phloem protein 2-A10 (.1)		Potri.015G118800 [exp]	2.00	0.8782
AT1G66200		ATGSR2, GLN1;2	glutamine synthetase 1;2, glut...		Potri.017G131100 [exp]	7.48	0.8274	Pt-CYTGS.5
AT4G38380			MATE efflux family protein (.1...		Potri.009G143400 [exp]	7.74	0.8049
AT4G35290		ATGLUR2, ATGLR3...	GLUTAMATE RECEPTOR 3.2, glutam...		Potri.009G168300 [exp]	8.12	0.8219	Pt-GLUR2.1
AT1G55150			DEA(D/H)-box RNA helicase fami...		Potri.003G038300 [exp]	9.16	0.7994
AT5G16530		PIN5	PIN-FORMED 5, Auxin efflux car...		Potri.013G087000 [exp]	9.79	0.8128	PIN9.2
AT3G20740		FIE1, FIS3, FIE	FERTILIZATION-INDEPENDENT ENDO...		Potri.001G417300 [exp]	10.39	0.8014	FIE.1,PGE901
AT4G38130		ATHDA19, ATHD1,...	ARABIDOPSIS HISTONE DEACETYLAS...		Potri.009G170700 [exp]	13.67	0.7917	HDA902,RPD3.1
AT3G49290		ABIL2	ABL interactor-like protein 2 ...		Potri.001G088100 [exp]	13.78	0.7900

Compare expression of checked genes

Potri.002G165300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.