Plant FIBer expression Database

Potri.002G165500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G46180 609 / 0 GC4 golgin candidate 4 (.1)
AT3G61570 572 / 0 GC3 ,GDAP1 GOLGIN CANDIDATE 3, GRIP-related ARF-binding domain-containing protein 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G091300
[exp]
1164 / 0 AT2G46180 587 / 0.0 golgin candidate 4 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036406
[exp]
781 / 0 AT2G46180 671 / 0.0 golgin candidate 4 (.1)
Lus10041081
[exp]
775 / 0 AT2G46180 676 / 0.0 golgin candidate 4 (.1)
PFAM info
Representative CDS sequence
>Potri.002G165500.1 pacid=42779766 polypeptide=Potri.002G165500.1.p locus=Potri.002G165500 ID=Potri.002G165500.1.v4.1 annot-version=v4.1
ATGATGTGGAGCTCGATTGAGAATTTGAAGCTAAACCTAAATAAGATTGCACTTGATGTGCATGACGACGACGAGGAGGAGCTCGAGATCCATGCCTCCA
GCAATGGCTACGATTCTCCGGTCTCTGACCGGAGGAACTCGCACCGTTTCGCGCATTCGAAGTCGGTTTCACGGTCTCTAGGTGCGAATGGGAATGGCTC
ACCGTACAATTTTGAGATTGAACAATACAAAGCACAAATCAAAAGGCTTCAGGAATCTGAGGGGGAGATTAAAGCACTGTCTATTAATTATGCAGCTATA
TTAAAAGAGAAGGAGGACCAGATTTCTAGATTGAACCAAGAAAATGGTTCACTGAAGCAAAATTTGGATGCAACAAAGGAGGCTCTCAATGTGTCGAGAA
CTGAGCATCTAAGAATATCAACAAGTAGCATCAATGCTATTAAGGGCAGTGGTGACCAGTCACCCAAACGACCACATAAATCTGCAAATCAAGCAAAGAA
CCGTGGTGGTAATCAAATACAAAACGGGCTCTTTCCAAAATATGATGGAACAGGCAATGGAATATTACATGATGTTCAACCTGATGTGATTCAGAGTAAG
ATGGAAGACAAGAAGGACAAGGAGCTTGTAGATTTACTGGAGGAGAAAAATAGGTCCCTGGCAGCAATGCAAGCTACTCATGAGTTGCAAATAAAAGAGC
TTAGAACTGAACTTGAAAAGGAACACGACAAATTAGCAAATATAGAGCTAAAATTGCAAGAGGAACAAAGTTTGAACAAATCTTTTCAGGAGGAGCTCAG
GGTTCTAAAAATGGACAGGCACAAAACCTCAATGGATGTGAACAAAATTCATGATGAATTGAATGAAAAAACATCAGAGATAAGACGATTGCAGATGGAG
TTGAGTAGGTGGGAAGATGCAGATCCTAATGACAGTGTTAAGAATTTGAAAAGAGTCATTGCGACCCTAGAGAAGGAGAATGTTAATCTCAAGATGGCGA
AGAATGAACTTGAGGCTGCTTTGCAAAGGAGCAGGAACTCTTCTCCTGACAAAACTTCTCCAGATGAGAAAGCGGATTCAACCACAACTTCTCCTAGAAA
GGAGGAAGTGGAGCTATTGTTGCAAAAATTGGAAAGAGATTTGAAGGAAACATGCCATGAAAAGGACAAAGCATTGCGAGAATTGGCCCGTCTCAAGCAG
CATTTGTTGGAAAAGGAATCTGAAGAATCGGAAAAAATGGATGAAGACATTAAGATTGTTGAAGAACTTCGTCAAAGTAATGAATATCAAAAGGCTCAAA
TATTACATTTGGAGAAAGCTCTAAAGCAGGCAATTGCAGGCCAGGAGGAAGTCAGAATGATGAGCAACAATGAAATCCAGAAGTCCAAAGAAATGATTGA
AGATTTGAATAAAAGACTTGCAAACTGTATGAGCACAATAGAATCAAAAAATGTTGAACTTCTAAATCTTCAAACTGCTCTTGGGCAGTATTTTGCTGAA
GTTGAAGCAAAGGAATATTTGGAGCGACAGTTGGCTTTCACAAGAGAAGAATCAGCTAAGCATTTTCAACTTTTGAAAGAAGCAGAGAGAGGGACAGAGG
AAGCAAAGAGGGAGAAAGAAGTAGTTTTGGCTAAGCTTTCAGATACTGAAAGAAAGTTTGCAGAAGGGAAGAGCAGAGTGAATAAGCTCGAGGAAGACAA
TGAAAAACTCCGTCGTGCTGTTGAACAGAGCATGACCAGACTTAATAGGATGTCCATGGATTCTGATTTTCTGGTGGACAGGCGCATTGTGATTAAATTA
CTAGTGACCTTCTTCCAGAGAAACCACAGCAAAGAGGTTTTGGATCTTATGGTTCGAATGCTTGGGTTCTCTGATGAAGACAAGCAGAGAATAGGTGCAG
CTCAACAAGGTGGCAAAGGTGTTGTTCGTGGAGTTTTGGGGCTACCTGGTCGCCTAGTTGGTGGAATCTTGGGAGGAAATGCAGCTGATGGTCAGACAAA
TTTGGCATCTGATAACCAGTCCTTTGCAGATATGTGGGTTGATTTTCTACTCAAGGAAACTGAAGAAAGGGAAAAGAGGGGATCTGGGCAAGAAGATACA
GGCAAATCCTATGAAGATTTGCAAGGAAGGAGTCCAAATGCTGCTGGGGTTGGTTCGCCGGTGCCCGACCATGGAACTAGCATATCTGGTATTGCTGGAC
CAAAATTTTCTCCAGCACAAAATTATGGTCCTATAGCCCCTCGAGGAAATTTACCACCATTTGCGCAGTCTGATTCCGAGTTCTCAACAGTTCCTTTAAC
ATCGTTCGACAACAGTTCTCGGATTTCAAGACTATTCACTAAACACTGA
AA sequence
>Potri.002G165500.1 pacid=42779766 polypeptide=Potri.002G165500.1.p locus=Potri.002G165500 ID=Potri.002G165500.1.v4.1 annot-version=v4.1
MMWSSIENLKLNLNKIALDVHDDDEEELEIHASSNGYDSPVSDRRNSHRFAHSKSVSRSLGANGNGSPYNFEIEQYKAQIKRLQESEGEIKALSINYAAI
LKEKEDQISRLNQENGSLKQNLDATKEALNVSRTEHLRISTSSINAIKGSGDQSPKRPHKSANQAKNRGGNQIQNGLFPKYDGTGNGILHDVQPDVIQSK
MEDKKDKELVDLLEEKNRSLAAMQATHELQIKELRTELEKEHDKLANIELKLQEEQSLNKSFQEELRVLKMDRHKTSMDVNKIHDELNEKTSEIRRLQME
LSRWEDADPNDSVKNLKRVIATLEKENVNLKMAKNELEAALQRSRNSSPDKTSPDEKADSTTTSPRKEEVELLLQKLERDLKETCHEKDKALRELARLKQ
HLLEKESEESEKMDEDIKIVEELRQSNEYQKAQILHLEKALKQAIAGQEEVRMMSNNEIQKSKEMIEDLNKRLANCMSTIESKNVELLNLQTALGQYFAE
VEAKEYLERQLAFTREESAKHFQLLKEAERGTEEAKREKEVVLAKLSDTERKFAEGKSRVNKLEEDNEKLRRAVEQSMTRLNRMSMDSDFLVDRRIVIKL
LVTFFQRNHSKEVLDLMVRMLGFSDEDKQRIGAAQQGGKGVVRGVLGLPGRLVGGILGGNAADGQTNLASDNQSFADMWVDFLLKETEEREKRGSGQEDT
GKSYEDLQGRSPNAAGVGSPVPDHGTSISGIAGPKFSPAQNYGPIAPRGNLPPFAQSDSEFSTVPLTSFDNSSRISRLFTKH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G46180 GC4 golgin candidate 4 (.1) Potri.002G165500
[exp]
0 1
AT5G05970 NEDD1 NEURAL PRECURSOR CELL EXPRESSE... Potri.008G060700
[exp]
7.07 0.7997
AT3G48860 unknown protein Potri.012G105400
[exp]
8.71 0.8181
AT5G66030 ATGRIP, GRIP Golgi-localized GRIP domain-co... Potri.005G099800
[exp]
9.74 0.7815
AT1G80350 FTR, FRC2, FRA2... KATANIN 1, FAT ROOT, FURCA2, F... Potri.003G057800
[exp]
11.31 0.8484
AT4G19900 alpha 1,4-glycosyltransferase ... Potri.015G122200
[exp]
11.40 0.7745
AT1G56460 HIT zinc finger ;PAPA-1-like c... Potri.005G014000
[exp]
13.11 0.7622
AT5G24710 Transducin/WD40 repeat-like su... Potri.006G081800
[exp]
15.36 0.8242
AT4G33650 APEM1, DRP3A, A... ABERRANT PEROXISOME MORPHOLOGY... Potri.007G118300
[exp]
21.21 0.7713
AT1G63300 Myosin heavy chain-related pro... Potri.001G106700
[exp]
25.27 0.8221
AT3G63460 EMB2221 transducin family protein / WD... Potri.009G055400
[exp]
29.93 0.7716

Potri.002G165500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.