Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46210 729 / 0 AtSLD2 sphingoid LCB desaturase 2, Fatty acid/sphingolipid desaturase (.1) AT3G61580 708 / 0 AtSLD1 sphingoid LCB desaturase 1, Fatty acid/sphingolipid desaturase (.1) AT5G53560 72 / 4e-15 B5#2, ATB5-A, ATCB5-E ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) AT1G26340 71 / 1e-14 B5 #6, B5#6, ATCB5-A ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1) AT5G48810 69 / 9e-14 B5#3, ATB5-B, ATCB5-D ARABIDOPSIS CYTOCHROME B5 ISOFORM D, cytochrome B5 isoform D (.1) AT2G32720 66 / 1e-12 B5 #4, B5#4, ATCB5-B ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) AT1G60660 60 / 5e-11 B5 #5, B5#5, ATCB5LP ARABIDOPSIS CYTOCHROME B5-LIKE PROTEIN, cytochrome B5-like protein (.1) AT2G46650 51 / 8e-08 B5 #1, B5#1, ATCB5-C ARABIDOPSIS CYTOCHROME B5 ISOFORM C, cytochrome B5 isoform C (.1) AT5G09680 50 / 6e-07 RLF reduced lateral root formation (.1.2) AT1G37130 52 / 8e-07 NIA2-1, CHL3, B29, NR2, NIA2, ATNR2 CHLORATE RESISTANT 3, ARABIDOPSIS NITRATE REDUCTASE 2, nitrate reductase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G091800 [exp] 875 / 0 AT2G46210 721 / 0.0 sphingoid LCB desaturase 2, Fatty acid/sphingolipid desaturase (.1) Potri.006G228200 [exp] 677 / 0 AT2G46210 620 / 0.0 sphingoid LCB desaturase 2, Fatty acid/sphingolipid desaturase (.1) Potri.001G314200 [exp] 67 / 4e-13 AT2G32720 199 / 3e-67 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Potri.002G242500 [exp] 67 / 4e-13 AT2G32720 221 / 7e-76 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Potri.017G054300 [exp] 66 / 5e-13 AT2G32720 221 / 6e-76 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Potri.010G156900 [exp] 66 / 6e-13 AT1G26340 166 / 4e-54 ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1) Potri.012G024600 [exp] 59 / 1e-10 AT5G53560 163 / 5e-53 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Potri.018G087600 [exp] 58 / 4e-10 AT1G60660 155 / 4e-50 ARABIDOPSIS CYTOCHROME B5-LIKE PROTEIN, cytochrome B5-like protein (.1) Potri.015G007600 [exp] 54 / 9e-09 AT5G53560 153 / 8e-49 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036408 [exp] 715 / 0 AT2G46210 700 / 0.0 sphingoid LCB desaturase 2, Fatty acid/sphingolipid desaturase (.1) Lus10035482 [exp] 664 / 0 AT3G61580 659 / 0.0 sphingoid LCB desaturase 1, Fatty acid/sphingolipid desaturase (.1) Lus10031102 [exp] 662 / 0 AT3G61580 659 / 0.0 sphingoid LCB desaturase 1, Fatty acid/sphingolipid desaturase (.1) Lus10041083 [exp] 624 / 0 AT2G46210 595 / 0.0 sphingoid LCB desaturase 2, Fatty acid/sphingolipid desaturase (.1) Lus10008838 [exp] 66 / 6e-13 AT5G53560 232 / 3e-80 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Lus10011858 [exp] 66 / 1e-12 AT2G32720 211 / 5e-72 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Lus10012954 [exp] 64 / 2e-12 AT1G60660 133 / 1e-41 ARABIDOPSIS CYTOCHROME B5-LIKE PROTEIN, cytochrome B5-like protein (.1) Lus10022794 [exp] 64 / 5e-12 AT2G32720 211 / 1e-71 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Lus10000651 [exp] 64 / 5e-12 AT1G26340 194 / 7e-65 ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1) Lus10036973 [exp] 63 / 7e-12 AT1G26340 193 / 8e-65 ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00173 [poplar] [flax] Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain PF00487 [poplar] [flax] FA_desaturase Fatty acid desaturase
Representative CDS sequence Show only first row Show all	>Potri.002G165800.1 pacid=42777801 polypeptide=Potri.002G165800.1.p locus=Potri.002G165800 ID=Potri.002G165800.1.v4.1 annot-version=v4.1 ATGGAGGGCGACAAAAAGTACATTACAGGCGAAGAGCTTAAGCAACACAACAAGGAAGGAGACTTGTGGATCTCTATCCAGGGAAAGGTTTATAATGTCT CTGATTGGGCTTATGAGCATCCAGGCGGAGATGTTGCTCTCCTGAATCTGGCAGGCCAAGATGTTACTGATGCATTTATTGCCTACCATCCTGGAACAGC ATGGCAATATCTTGACAAGTTCTTTACGGGGTATTATCTCAAAGATTTCAAGGTGTCAGAGACGTCCAAGGATTACAGGAGGCTTGCTTCAGAGTTTGCG AAACTGGGTTTGTTTGAAAAGAAAGGACATATTACCATGTATGCCCTCGCATCTATTGCATTGATGTTTTGCGTTGTTCTTTATGGTGTTTTGTGTTGCC AGAGTGTTTGGGCTCATTTAGGATCTGCTTTGGTGTTGGGTTTTCTTTGGATTCAAAGTGCCTATATTGGTCATGATTCGGGGCATTACCAAGTAATGAA GAGTCGTGGTTATAACAAATTTGCTCAATTTGTTGCTGGGAATTCCCTCACAGGCATTAGCATTGCTTGGTGGAAATGGACCCACAATGCACACCATCTT GCCTGCAACAGTCTTGATTACGATCCTGATCTTCAACACATACCAGTCTTTGCGGTAAATTCGACTTTTTTTAATTCGATAAAGTCTTGCTTTTATGGAA GGTACTTGGATTTTGATCCTGTGGCAAGGTTTTTTGTGAGTTACCAACATTGGACTTTTTATCCAGTAATGTGTGTTGCCAGGGTCAATTTGTATTTACA AACATTCTTGCTATTGTTTTCAAAGAGAAAATTCCCAGATAGAGCTTTGAACATCTTGGGAATCCTCATCTTTTGGACTTGGTTCCCTCTACTTGTGTCT TGTCTCCCTAATTGGCCTGAGAGGGTGATGTTTGTGCTTGCAAGCTTTGCTGTTACCGCAATTCAACACGTTCAATTTTGTTTGAATCATTTTGCGGCCG ATGTTTACACTGGACCTCCAAAAGGGAATGATTGGTTTGAGAAACAGACAGGAGGGACTTTGGATATTTCGTGCTCATCTTGGATGGATTGGTTTTACGG TGGTTTGCAGTTTCAGCTTGAGCATCACTTGTTTCCAAGGATGCCAAGATGCCAATTGAGAAGGGTTTCACCGTTGGTACAGGATCTATGCAAGAAGCAC AATTTGTCTTACAGGAGTTTGTCCTTCTGGGAAGCCAATGTGTGGACAATCAGGAGACTCAGGAACGTTGCCCAGCAGGCTAGGGATCTGTCCAACCCCG TCCCTAAAAATTTGTTGTGGGAAGCTGTTAATACTCATGGATGA
AA sequence Show only first row Show all	>Potri.002G165800.1 pacid=42777801 polypeptide=Potri.002G165800.1.p locus=Potri.002G165800 ID=Potri.002G165800.1.v4.1 annot-version=v4.1 MEGDKKYITGEELKQHNKEGDLWISIQGKVYNVSDWAYEHPGGDVALLNLAGQDVTDAFIAYHPGTAWQYLDKFFTGYYLKDFKVSETSKDYRRLASEFA KLGLFEKKGHITMYALASIALMFCVVLYGVLCCQSVWAHLGSALVLGFLWIQSAYIGHDSGHYQVMKSRGYNKFAQFVAGNSLTGISIAWWKWTHNAHHL ACNSLDYDPDLQHIPVFAVNSTFFNSIKSCFYGRYLDFDPVARFFVSYQHWTFYPVMCVARVNLYLQTFLLLFSKRKFPDRALNILGILIFWTWFPLLVS CLPNWPERVMFVLASFAVTAIQHVQFCLNHFAADVYTGPPKGNDWFEKQTGGTLDISCSSWMDWFYGGLQFQLEHHLFPRMPRCQLRRVSPLVQDLCKKH NLSYRSLSFWEANVWTIRRLRNVAQQARDLSNPVPKNLLWEAVNTHG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G46210		AtSLD2	sphingoid LCB desaturase 2, Fa...		Potri.002G165800 [exp]	0	1
AT5G66410		PLP3B	phosducin-like protein 3 homol...		Potri.007G020400 [exp]	1.41	0.9232
AT2G17980		ATSLY1	Sec1/munc18-like (SM) proteins...		Potri.009G165300 [exp]	7.34	0.8510	SLY1.2
AT5G20500			Glutaredoxin family protein (....		Potri.018G133400 [exp]	10.48	0.8897
AT1G78300		14-3-3OMEGA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Potri.002G099800 [exp]	13.30	0.8911	Pt-CHI.3
AT4G28550			Ypt/Rab-GAP domain of gyp1p su...		Potri.005G227400 [exp]	13.56	0.8899
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Potri.013G123600 [exp]	16.97	0.8977	Pt-RAB11.8
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Potri.001G361300 [exp]	24.67	0.8561
AT3G04780			Protein of unknown function (D...		Potri.013G039500 [exp]	25.13	0.8713
AT4G02620			vacuolar ATPase subunit F fami...		Potri.005G217600 [exp]	30.00	0.8648	VATF.1
AT5G19980		GONST4	golgi nucleotide sugar transpo...		Potri.018G071700 [exp]	30.00	0.8705

Compare expression of checked genes

Potri.002G165800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.