Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46225 397 / 3e-140 ABIL1, ABI1L1 ABI-1-like 1 (.1.2.3) AT3G49290 146 / 9e-42 ABIL2 ABL interactor-like protein 2 (.1.2) AT5G24310 143 / 3e-41 ABIL3 ABL interactor-like protein 3 (.1.2) AT5G42030 121 / 1e-32 ABIL4 ABL interactor-like protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G092300 [exp] 560 / 0 AT2G46225 396 / 1e-139 ABI-1-like 1 (.1.2.3) Potri.012G016900 [exp] 152 / 2e-43 AT3G49290 353 / 5e-122 ABL interactor-like protein 2 (.1.2) Potri.001G088100 [exp] 142 / 7e-40 AT3G49290 265 / 9e-88 ABL interactor-like protein 2 (.1.2) Potri.003G142800 [exp] 137 / 3e-38 AT3G49290 292 / 3e-98 ABL interactor-like protein 2 (.1.2) Potri.018G082600 [exp] 96 / 6e-23 AT2G46225 94 / 1e-22 ABI-1-like 1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002151 [exp] 426 / 2e-151 AT2G46225 370 / 2e-129 ABI-1-like 1 (.1.2.3) Lus10008737 [exp] 426 / 4e-151 AT2G46225 377 / 5e-132 ABI-1-like 1 (.1.2.3) Lus10005919 [exp] 150 / 5e-43 AT5G24310 400 / 2e-140 ABL interactor-like protein 3 (.1.2) Lus10022393 [exp] 117 / 1e-30 AT5G24310 360 / 2e-125 ABL interactor-like protein 3 (.1.2) Lus10032421 [exp] 98 / 2e-23 AT3G49290 171 / 2e-51 ABL interactor-like protein 2 (.1.2) Lus10023654 [exp] 92 / 3e-21 AT5G42030 91 / 3e-21 ABL interactor-like protein 4 (.1) Lus10043223 [exp] 91 / 6e-20 AT2G32230 433 / 2e-142 proteinaceous RNase P 1 (.1) Lus10023052 [exp] 82 / 2e-18 AT5G24310 101 / 7e-27 ABL interactor-like protein 3 (.1.2) Lus10034928 [exp] 76 / 9e-17 AT5G42030 87 / 4e-21 ABL interactor-like protein 4 (.1) Lus10011102 [exp] 77 / 1e-15 AT4G29010 1043 / 0.0 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G165900.1 pacid=42778944 polypeptide=Potri.002G165900.1.p locus=Potri.002G165900 ID=Potri.002G165900.1.v4.1 annot-version=v4.1 ATGATGGAACTGGACCAAACGAGGCCGGAGAACCCGGCCATGACTTTCGATGAGGTGTCCATGGAGCGTAGCAAGAGCTTCATCAAAGCCTTGCAGGAGC TGAAGAACTTAAGGCCTCAATTGTATTCTGCTGCCGAATATTGTGAGAAGTCTTATCTTCATAGCGAGCAGAAACAGACGGTACTGGACAACCTGAAAGA TTATGCCGTGCGAGCTCTTGTTAATGCTGTCGATCACCTTGGTACTGTGGCTTACAAGTTAACTGACCTTCTTGAGCAACAAACATTTGATGTCTCAACC ATGGAGGTTAAGGTTTCTTGTCTGAATCAGCAATTTCTTACATGCCAAACATATACAGTTAAGGGAGGTCTTCGACAACAGCAGCTGTTGGCATTCATCC CAAGACATCACAAGCACTACATTTTGCCAAACTCTGTCAATAAGAAGGTACATTTTAGCCCACAAATACAGACTGATGCAAGACAAAATCATTTTCAAGC TAGATCTCGTCTTCAGCTTTCAGGTTCCCCAGCATCAAAAACTCTTTCCTGGCACTTAGTTTCTGAGACCAAGTCTACACTGAAAGGGACTCTGCATGCT ATGACAAGTAATGAAGATGCAAAAGCTTCTGGAAAATCTTCTGCAGTTTTTCAACTCTTGGATGAAGAAGAGAGTAGAAAAACAAGATCCTCAGGAGGTC TTGCTCAACTATCAAGCAGAGGTCCTGCAGCTGGTGCAATCATGCCAACATTTGATGTCCCACGCAGGGAATTGTTGGATACTTCTAAGCCTTTGACAGC ATTCAGGTCATTTGACAACCCAAGGCATGAGATTGTGCGTGCTCCTGTTCGTAGTAAAAGCATGCTATCAGCTTTCTTTGTAAAACAGAAAACCCCGAAG TTGAAGGCTGGCTCTGCTTCGTGA
AA sequence Show only first row Show all	>Potri.002G165900.1 pacid=42778944 polypeptide=Potri.002G165900.1.p locus=Potri.002G165900 ID=Potri.002G165900.1.v4.1 annot-version=v4.1 MMELDQTRPENPAMTFDEVSMERSKSFIKALQELKNLRPQLYSAAEYCEKSYLHSEQKQTVLDNLKDYAVRALVNAVDHLGTVAYKLTDLLEQQTFDVST MEVKVSCLNQQFLTCQTYTVKGGLRQQQLLAFIPRHHKHYILPNSVNKKVHFSPQIQTDARQNHFQARSRLQLSGSPASKTLSWHLVSETKSTLKGTLHA MTSNEDAKASGKSSAVFQLLDEEESRKTRSSGGLAQLSSRGPAAGAIMPTFDVPRRELLDTSKPLTAFRSFDNPRHEIVRAPVRSKSMLSAFFVKQKTPK LKAGSAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G46225		ABIL1, ABI1L1	ABI-1-like 1 (.1.2.3)		Potri.002G165900 [exp]	0	1
AT3G53710		AGD6	ARF-GAP domain 6 (.1.2)		Potri.016G095100 [exp]	3.60	0.8217
AT3G23410		ATFAO3	ARABIDOPSIS FATTY ALCOHOL OXID...		Potri.008G169300 [exp]	5.91	0.7576
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.003G008200 [exp]	6.63	0.8032
AT3G21240		AT4CL2, 4CL2	4-coumarate:CoA ligase 2 (.1)		Potri.006G169700 [exp]	8.06	0.7626
AT4G11820		FKP1, EMB2778, ...	FLAKY POLLEN 1, hydroxymethylg...		Potri.001G111700 [exp]	15.29	0.7604
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Potri.011G154600 [exp]	17.66	0.7421
AT3G07300			NagB/RpiA/CoA transferase-like...		Potri.003G199301 [exp]	18.57	0.6812
AT4G40050			Protein of unknown function (D...		Potri.007G096800 [exp]	20.49	0.7466
AT3G19540			Protein of unknown function (D...		Potri.009G092400 [exp]	20.56	0.7477
AT5G22770		ALPHA-ADR	alpha-adaptin (.1.2.3)		Potri.004G189700 [exp]	24.00	0.7028

Compare expression of checked genes

Potri.002G165900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.