Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01220 524 / 0 MGP4 male gametophyte defective 4, Nucleotide-diphospho-sugar transferase family protein (.1.2) AT4G01770 479 / 1e-170 RGXT1 rhamnogalacturonan xylosyltransferase 1 (.1) AT4G01750 474 / 2e-168 RGXT2 rhamnogalacturonan xylosyltransferase 2 (.1) AT1G56550 472 / 2e-167 RXGT1 RhamnoGalacturonan specific Xylosyltransferase 1 (.1) AT1G70630 77 / 4e-15 Nucleotide-diphospho-sugar transferase family protein (.1) AT4G19970 65 / 3e-11 unknown protein AT1G75110 55 / 3e-08 RRA2 REDUCED RESIDUAL ARABINOSE 2, Nucleotide-diphospho-sugar transferase family protein (.1) AT2G35610 55 / 6e-08 XEG113 xyloglucanase 113 (.1) AT1G28710 52 / 2e-07 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) AT5G44820 52 / 3e-07 Nucleotide-diphospho-sugar transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G092400 [exp] 592 / 0 AT4G01220 530 / 0.0 male gametophyte defective 4, Nucleotide-diphospho-sugar transferase family protein (.1.2) Potri.008G186800 [exp] 61 / 7e-10 AT1G70630 668 / 0.0 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.008G142200 [exp] 54 / 6e-08 AT1G14590 454 / 2e-160 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.010G099400 [exp] 54 / 9e-08 AT1G14590 490 / 1e-173 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.004G235800 [exp] 52 / 4e-07 AT2G35610 976 / 0.0 xyloglucanase 113 (.1) Potri.014G051600 [exp] 52 / 5e-07 AT1G28710 344 / 5e-117 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.012G037300 [exp] 51 / 5e-07 AT1G14590 404 / 1e-140 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.014G042700 [exp] 49 / 3e-06 AT1G19360 635 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Potri.002G134400 [exp] 47 / 2e-05 AT1G19360 622 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002153 [exp] 525 / 0 AT4G01220 541 / 0.0 male gametophyte defective 4, Nucleotide-diphospho-sugar transferase family protein (.1.2) Lus10012650 [exp] 523 / 0 AT4G01220 522 / 0.0 male gametophyte defective 4, Nucleotide-diphospho-sugar transferase family protein (.1.2) Lus10008735 [exp] 458 / 2e-162 AT4G01220 472 / 8e-168 male gametophyte defective 4, Nucleotide-diphospho-sugar transferase family protein (.1.2) Lus10006212 [exp] 63 / 1e-10 AT1G70630 610 / 0.0 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10036860 [exp] 59 / 1e-09 AT1G70630 450 / 2e-157 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10034422 [exp] 59 / 2e-09 AT1G14590 411 / 2e-143 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10019139 [exp] 57 / 6e-09 AT1G14590 406 / 8e-142 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10031927 [exp] 54 / 5e-08 AT1G14590 386 / 7e-135 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10018812 [exp] 52 / 3e-07 AT1G19360 636 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Lus10041977 [exp] 52 / 5e-07 AT1G14590 296 / 9e-98 Nucleotide-diphospho-sugar transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF03407 [poplar] [flax] Nucleotid_trans Nucleotide-diphospho-sugar transferase
Representative CDS sequence Show only first row Show all	>Potri.002G166000.1 pacid=42776922 polypeptide=Potri.002G166000.1.p locus=Potri.002G166000 ID=Potri.002G166000.1.v4.1 annot-version=v4.1 ATGTCAACATTTTTGCACCAAAGACCTCTCTACAGCCCACTCTCAGATCCCGACCCACTATCACCACGGCAATCTTCCTCCTCCCAAAGACAAATATCCC TCTTCAGCCGCACAGGCCTAATAGCCTTACTGTCCCTCCTCCTGATTCTTGGCGTAATTTTACCCTGGACAGGCACGCCCTCAATTTTCTCAGCAACAAA ACCTGCCTCACTAACAAAATGGCAACAGTACACACTATCCCAAGCGGTGTCGTTTGTTGCGAAAAACAAGACAGTGATTGTTTGTGCAGTTAGCCAGCCT TACTTGCCATTTTTAAGTAACTGGTTGATTAGTATTTCGAGACAAAAGCATCAAGATAAGGTTCTTGTTATTGCTGAGGATTATGCTACTCTTTATAAGG TTAATGAGAAATGGCCTGGTCATGCTGTTCTCGTACCTCCTGCTCCTGATTCACAGACTGCACATAAGTTTGGTTCTCAGGGGTTTTTCAATTTCACATC CCGGAGGCCTAGGCACTTGCTGCACATTTTGGAGCTTGGATATAATGTGATGTACAATGATGTGGATATGGTCTGGTTGCAAGATCCTTTCCCGTATTTG GAGGGAAACCACGATGTCTACTTCACCGATGACATGGCTGCGGTGAAGCCGCTGGGCCATTCCCATGATTTACCACCCCCGGGAAAAAAGGGGCGCACTT ATATATGTAGCTGCATGATTTTCATGCACCCCACTGATGGAGCAAAACTAGTTTTGAAGAAATGGATTGAGGAACTTCAAGCTCAGCCTTGGTCCAAAAC AAAGAAATCCAATGATCAGCCTGCTTTTAATTGGGCATTGAACAAAACAGCTGGACAGGTGGACCTGTATCTTCTGCCCCAGACAGCATTCCCAACAGGA GGGTTATACTTCAAGAATCAGACATGGGTGCAAGAAACTAAGGGAAAGCATGCTATCATTCACAACAATTACATCACAGGTTTTGAGAAGAAGATAAAGC GTTTCCATGATTATGGTCTCTGGTTGGTGGATGGTCATGCTAGTGAATCCCCACTTGGTAAATTATAA
AA sequence Show only first row Show all	>Potri.002G166000.1 pacid=42776922 polypeptide=Potri.002G166000.1.p locus=Potri.002G166000 ID=Potri.002G166000.1.v4.1 annot-version=v4.1 MSTFLHQRPLYSPLSDPDPLSPRQSSSSQRQISLFSRTGLIALLSLLLILGVILPWTGTPSIFSATKPASLTKWQQYTLSQAVSFVAKNKTVIVCAVSQP YLPFLSNWLISISRQKHQDKVLVIAEDYATLYKVNEKWPGHAVLVPPAPDSQTAHKFGSQGFFNFTSRRPRHLLHILELGYNVMYNDVDMVWLQDPFPYL EGNHDVYFTDDMAAVKPLGHSHDLPPPGKKGRTYICSCMIFMHPTDGAKLVLKKWIEELQAQPWSKTKKSNDQPAFNWALNKTAGQVDLYLLPQTAFPTG GLYFKNQTWVQETKGKHAIIHNNYITGFEKKIKRFHDYGLWLVDGHASESPLGKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G01220		MGP4	male gametophyte defective 4, ...		Potri.002G166000 [exp]	0	1
AT2G40800			unknown protein		Potri.019G062200 [exp]	3.46	0.8312
AT5G20590		TBL5	TRICHOME BIREFRINGENCE-LIKE 5 ...		Potri.018G133000 [exp]	6.00	0.7674
AT5G58030			Transport protein particle (TR...		Potri.006G187300 [exp]	8.48	0.7446
AT3G26340			N-terminal nucleophile aminohy...		Potri.010G058100 [exp]	13.63	0.7931	PBE1.1
AT5G45620			Proteasome component (PCI) dom...		Potri.003G098400 [exp]	18.33	0.7804
AT1G20200		HAP15, EMB2719	HAPLESS 15, EMBRYO DEFECTIVE 2...		Potri.004G176600 [exp]	23.68	0.7681
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Potri.011G079700 [exp]	24.20	0.8117	Pt-I.1
AT3G04830			Protein prenylyltransferase su...		Potri.005G051300 [exp]	30.82	0.7550
AT1G08700		PS1	Presenilin-1 (.1)		Potri.013G067700 [exp]	36.46	0.7852
AT1G24510			TCP-1/cpn60 chaperonin family ...		Potri.008G182300 [exp]	38.96	0.7845

Compare expression of checked genes

Potri.002G166000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.