Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01210 1166 / 0 glycosyl transferase family 1 protein (.1) AT5G04480 662 / 0 UDP-Glycosyltransferase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G092500 [exp] 1689 / 0 AT4G01210 1237 / 0.0 glycosyl transferase family 1 protein (.1) Potri.008G029400 [exp] 688 / 0 AT5G04480 1237 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.010G232000 [exp] 678 / 0 AT5G04480 1229 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.006G122650 [exp] 38 / 0.0008 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002154 [exp] 1315 / 0 AT4G01210 1268 / 0.0 glycosyl transferase family 1 protein (.1) Lus10008732 [exp] 1303 / 0 AT4G01210 1264 / 0.0 glycosyl transferase family 1 protein (.1) Lus10028829 [exp] 663 / 0 AT5G04480 1216 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10017452 [exp] 648 / 0 AT5G04480 1202 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00534 [poplar] [flax] Glycos_transf_1 Glycosyl transferases group 1
Representative CDS sequence Show only first row Show all	>Potri.002G166100.1 pacid=42778468 polypeptide=Potri.002G166100.1.p locus=Potri.002G166100 ID=Potri.002G166100.1.v4.1 annot-version=v4.1 ATGGGTTCATTAGAGAGTGGAGGAATCTCCTTCAAAAGAGACAGCAACAATCTTATTCGTTCTCATTCAGCTGGTAGAACTGAAAGAAACCCTTTTTTGT ATAGACCCAGATCGAGACTTTCTCGTTTCTTGCTTTTCAAGAAGTTAGATTACATTCAATGGATTTGTACTGTTGCTGTTTTTCTCTTCTTTGTAGTTCT ATTTCAGATGTTTTTGCCTGGTTCTGTTGTGGAGAAATCTGAACTAGGCTCTTCTCCATGGAGAGGAATGGAGTTGGTTAATAAGGATTTGTTGTATTTG AAGGAGATTGGTGGGTTAGATTTTGGTGAAGATATCAAGTTCGAACCTTCGAAGATATTACAAAAGTTTCGAAAAGAGAACAGAGAGATGAATATGCCAT TTACTAACGGGACATTAAGTCGTTTTCCTTATAGGAAACCGCAGCTTGCATTGGTGTTTGCGGATCTGTTGGTTGATCCACAGCAACTGTTAATGGTGAC TGTTGCTACTGCATTGCAAGAGATTGGCTACACAATTCATGTTTATACACTACGAGATGGTCCTGTGCAAAACATTTGGAAGAGCATGGGATATCCGGTT ACCATCATTCAAATGAGCCACAAACTTGAAATTGCTGTTGATTGGCTAAACTATGATGGCATACTTGTGAATTCTCTTGAAACAAGGAGTGTCATCTCTT GTTTTATGCAGGAACCTTTTAAGTCCGTGCCTCTTATATGGACCATCCATGAAAGAGCACTTGCTATTCGTTCAAGACAGTACACTTCAAGTTGGCAAAT TGAGCTTCTGAATGATTGGAGAAAAGCTTTCAACCGGGCTACTGTAGTAGTCTTCCCAAATCATGTCCTTCCGATGATGTACTCTGCATTTGATGCTGGA AACTATTATGTTATTCCTGGTTCCCCTGCTGAAGTATGGGAAGCAGATACTACAATGGCATTGTACAATGATGATATACGCGTGAAGATGGGCTATGAGC CCACTGACATTGTCATTGCAGTTGTGGGAAGTCAATTTTTGTACAGGGGTTTGTGGCTGGAGCATGCGCTTGTTTTGAAGGCCCTGTTACCACTTTTGCA AGACTTTCCATTGGATAGTAATTCAATTTCTCATCTCAAAATCATTGTTTTAAGCGGGGATTCTACCGGTAACTACAGTGCAGCTGTTGAGGCTATTGCT GTTAACTTGAGTTATCCAAGAGGTACTGTAAAACACTTTGCTGTTGATGGTGATGTGAGTAGTGCCCTTAGTGCAGTCGATCTTGTGATATATGGATCCT TTCTTGAGGAGCAGTCTTTTCCTGAAATTTTGGTGAGAGCCATGTCCATAGGAAAACCCATCATAGCCCCAGATCTCTCCATGATCGGGAAATATGTTGA TGACAGGGTGAATGGCTATCTTTTTCCCAAGGAAAACCTCAAGGCTTTGACACAGATTGTATTGCAAGCGATCTCCAAAGGGACATTATCACCTCTAGCT CGTAACATTGCTTCAATAGGAAAAAGTACAGCTAAAAACCTGATGGTTCTAGAAACCATTGAGGGCTATGCTACACTACTTGAAAATGTTCTCAAGCTTC CATCAGAAGTTGCACTTCCTAAGGCTGTTCCAGAAATTCCTCCAAAACTAAAAAAAGAGTGGTGCTGGAATCTATTTAAAGCATTTCTAAATTCAACACA TGAAGACGTAACTTTGAAAAGTTCTAGATATTTAAACAAGGTTGAGGAACAGTGGAACCATGAGCAAGGAGAGAGCACTGGTTCAATTGCCGCTACCGAT GATTCATTCTCATATGACATTTGGGAGGAAGAGAAAAATATTCTGATGCTCAATACTAGAAAGAGAAGAGAGGAAGAAGAGCTAAAAGATAGAACTGATC AACCTCGTGGAACATGGGAGGAAGTATATAGAAGTGCCAAAAGGGCTGATAGGTCCAGGAATGATTTACATGAAAGGGATGAAGGAGAACTTTTGAGGAC AGGGCAACCGTTATGCATATATGAACCATATTTTGGGGAAGGAACCTGGTCTTTTCTTCATCTAAGTTCACTTTATCGAGGAATAGGATTGTCCACAAAA GGTCGAAGACCCAGGACAGATGACATTGATGCACCCTCCCGTCTGTCACTTCTCAGCAACTCATACTATCGAGATGCCCTAGGTGATTATGGAGCTTTTT TTGCAATTGCAAATCGAATTGACCGTATTCACAAGAATTCTTGGATAGGGTTTCAATCTTGGAGAGCAACGGCAAGGAAGGCATCTTTGTCTAGGATTGC TGAAAAGGCATTGATAGATGCTATTGAAACACAAACGCATCGGGACGCGGTTTACTTTTGGGTTCCCATGGACATGGATCCAAGAAGTCACTTAAGGAGG GACTTTTGGTCTTTCTGTGATGCTATAAATGCTGGAAATTGCAAGTTAGCTTTTTCCGAGGCTTTTAAGAGGATGTACGGCATCAAGCATGATTTGGATT CTTTACCATCCATGCCTGAAGATGGGGATACATGGTCTGTCATGTTGAGTTTTGCTTTGCCAACAAGGTCCTTCCTAGAGTTTGTAATGTTTTCAAGAAT GTTTGTGGACGCATTGGATGCACAGATGTATGATGAGCACCATCAAAGTGGGCGATGTTATCTGAGTCCAGCTAAGGATAAGCATTGCTACTCACGGGTT CTTGAGCTGCTCATAAATGTCTGGGCATACCACAGTGCACGACAGATGGTGTACGTGAATCCTGAGACTGGCCTGATGAAGGAGCAACACACGGTCAAGA GCCGCAGAGGCAAGATGTGGGTTAGATGGTTCTCATACAGCGTTCTTAAGAGCATGGATGAGGACTTGGCTGAAGAGGCAGATTCTGATCGGCCCAAGAG AAGGTGGTTATGGCCTTCAACGGGTGAGGTTGTATGGGAAGGTGTATATGAGAAAGAGAGGAATCTACGGAATCATCAGAAAGAGAAGAGGAGGCAACAA AGCAAGGACAAACAACAAAGAATGAGGAAAAAACACCGTCAAAAAGTGTTGGGAAAATACGTGAAGCCCCTACCAGAAGACATAGAAAATTCAAACTCTA CAATGTCTACGTCAGAAACTTTATAG
AA sequence Show only first row Show all	>Potri.002G166100.1 pacid=42778468 polypeptide=Potri.002G166100.1.p locus=Potri.002G166100 ID=Potri.002G166100.1.v4.1 annot-version=v4.1 MGSLESGGISFKRDSNNLIRSHSAGRTERNPFLYRPRSRLSRFLLFKKLDYIQWICTVAVFLFFVVLFQMFLPGSVVEKSELGSSPWRGMELVNKDLLYL KEIGGLDFGEDIKFEPSKILQKFRKENREMNMPFTNGTLSRFPYRKPQLALVFADLLVDPQQLLMVTVATALQEIGYTIHVYTLRDGPVQNIWKSMGYPV TIIQMSHKLEIAVDWLNYDGILVNSLETRSVISCFMQEPFKSVPLIWTIHERALAIRSRQYTSSWQIELLNDWRKAFNRATVVVFPNHVLPMMYSAFDAG NYYVIPGSPAEVWEADTTMALYNDDIRVKMGYEPTDIVIAVVGSQFLYRGLWLEHALVLKALLPLLQDFPLDSNSISHLKIIVLSGDSTGNYSAAVEAIA VNLSYPRGTVKHFAVDGDVSSALSAVDLVIYGSFLEEQSFPEILVRAMSIGKPIIAPDLSMIGKYVDDRVNGYLFPKENLKALTQIVLQAISKGTLSPLA RNIASIGKSTAKNLMVLETIEGYATLLENVLKLPSEVALPKAVPEIPPKLKKEWCWNLFKAFLNSTHEDVTLKSSRYLNKVEEQWNHEQGESTGSIAATD DSFSYDIWEEEKNILMLNTRKRREEEELKDRTDQPRGTWEEVYRSAKRADRSRNDLHERDEGELLRTGQPLCIYEPYFGEGTWSFLHLSSLYRGIGLSTK GRRPRTDDIDAPSRLSLLSNSYYRDALGDYGAFFAIANRIDRIHKNSWIGFQSWRATARKASLSRIAEKALIDAIETQTHRDAVYFWVPMDMDPRSHLRR DFWSFCDAINAGNCKLAFSEAFKRMYGIKHDLDSLPSMPEDGDTWSVMLSFALPTRSFLEFVMFSRMFVDALDAQMYDEHHQSGRCYLSPAKDKHCYSRV LELLINVWAYHSARQMVYVNPETGLMKEQHTVKSRRGKMWVRWFSYSVLKSMDEDLAEEADSDRPKRRWLWPSTGEVVWEGVYEKERNLRNHQKEKRRQQ SKDKQQRMRKKHRQKVLGKYVKPLPEDIENSNSTMSTSETL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G01210			glycosyl transferase family 1 ...		Potri.002G166100 [exp]	0	1
AT4G21890			unknown protein		Potri.011G001800 [exp]	1.73	0.7915
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Potri.013G019800 [exp]	2.82	0.7859
AT5G42620			metalloendopeptidases;zinc ion...		Potri.014G040800 [exp]	4.58	0.7393
AT5G43710			Glycosyl hydrolase family 47 p...		Potri.008G160900 [exp]	5.65	0.7494
AT2G21630			Sec23/Sec24 protein transport ...		Potri.014G178500 [exp]	8.00	0.7894
AT1G69910			Protein kinase superfamily pro...		Potri.010G035300 [exp]	13.41	0.7393
AT1G31420		FEI1	FEI 1, Leucine-rich repeat pro...		Potri.001G129000 [exp]	14.89	0.6902
AT1G12460			Leucine-rich repeat protein ki...		Potri.003G117500 [exp]	18.00	0.7419
AT4G28760			Protein of unknown function (D...		Potri.002G253600 [exp]	27.65	0.7516
AT1G29470			S-adenosyl-L-methionine-depend...		Potri.002G075800 [exp]	28.12	0.7708

Compare expression of checked genes

Potri.002G166100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.