Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46240 140 / 2e-33 ATBAG6, BAG6 ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 6, BCL-2-associated athanogene 6 (.1) AT1G12060 74 / 1e-14 ATBAG5 BCL-2-associated athanogene 5 (.1) AT5G62390 59 / 1e-08 ATBAG7 BCL-2-associated athanogene 7 (.1) AT3G29310 56 / 1e-07 calmodulin-binding protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G167500 [exp] 80 / 6e-15 AT1G12060 88 / 1e-19 BCL-2-associated athanogene 5 (.1) Potri.017G091100 [exp] 67 / 4e-11 AT3G29310 141 / 2e-36 calmodulin-binding protein-related (.1) Potri.016G014900 [exp] 63 / 1e-10 AT1G12060 159 / 6e-49 BCL-2-associated athanogene 5 (.1) Potri.015G126800 [exp] 64 / 4e-10 AT5G62390 311 / 1e-102 BCL-2-associated athanogene 7 (.1) Potri.012G126000 [exp] 62 / 2e-09 AT5G62390 108 / 7e-26 BCL-2-associated athanogene 7 (.1) Potri.014G093150 [exp] 0 / 1 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010133 [exp] 263 / 2e-72 AT2G46240 67 / 5e-12 ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 6, BCL-2-associated athanogene 6 (.1) Lus10012648 [exp] 261 / 3e-71 AT2G46240 157 / 1e-38 ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 6, BCL-2-associated athanogene 6 (.1) Lus10038064 [exp] 66 / 1e-10 AT3G29310 139 / 7e-36 calmodulin-binding protein-related (.1) Lus10026469 [exp] 63 / 7e-10 AT3G29310 140 / 3e-36 calmodulin-binding protein-related (.1) Lus10010486 [exp] 60 / 3e-09 AT1G12060 201 / 6e-65 BCL-2-associated athanogene 5 (.1) Lus10003798 [exp] 59 / 3e-08 AT1G12050 667 / 0.0 fumarylacetoacetase, putative (.1) Lus10031147 [exp] 58 / 4e-08 AT5G62390 331 / 3e-110 BCL-2-associated athanogene 7 (.1) Lus10031724 [exp] 57 / 4e-08 AT5G62390 334 / 1e-111 BCL-2-associated athanogene 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02179 [poplar] [flax] BAG BAG domain
Representative CDS sequence Show only first row Show all	>Potri.002G166300.2 pacid=42778918 polypeptide=Potri.002G166300.2.p locus=Potri.002G166300 ID=Potri.002G166300.2.v4.1 annot-version=v4.1 ATGATGCCTGTGTATAGATACATGGACTCACACCCGATGCGCGGAGACCATGTACCTCCCATGCAGCATTATCATCCAAGCATTGGGGCTGTTCCACCTC ATATGCATGTTGATCCATCCAAATCTGCTGCTCTCTATGGATTTTGTCCTTATGGGAACAACTTCGGGTACTCGGTTCCATGTCATGCCTGCTGTGGCCA TGGTAACTTCACTGGTTACTATGGTCCCAGACCTTCTTGTTCTCATTTTCCACCACCTCAATATCAGTGCTATGGATATCCTCCGTATCATGAAACTATG CCTGTACAGTATGTCCCTTCTCCACATTATTCGATGGAACAGCCAAGATATGAATATGACAAGGTCGTCTCTAGCAACAATCATTGCTGTGGTTGCCGGA GTCACACCCATGACCAGAAGAGTGATGAAAGTGTGAAGGTGGAGGAGCTGGATCCTGACTCTCAGAAGAAAGAAGGCGACTCTTTGGTTCCATTTCAGGT GAAAAATTACCCATACCCAGTTGTGTGGATCCCACCAGACAAAATAAAGAACGAAGAAGATAGAAAACCTGTGGACTCAGAAATGGCAAGCGGGGAGAAG GCTTCACGAGTTATGAAGCCTCCTGAGAGTGTAAAGCCACCCGAAGAAAAAACAAGAGTGTGGAATGGCTGGGTTCCTCTTGACTTGAAAAGCTTTGGAC CCTTCATGCAAGCTGAAGATCAGAAGAGAACTCAAAATCATCAAAATGAGGACGAATTGCAACAATTTCCATTTCCTATATTCTGGTTGCCACCATACAA CAAACAGAATGACACTTCCAACAAAGATGGTGCACAGACAATTGCATCTTCAAAACCTGTAGACGAGCCACCTTCTGCGGTCAAGTTCTTCCCAGTGAAA CTACCTGGCAGCAGCGATGGCTCTAACAAACTTCTAGAAGGCCAATACAATTCTAGAGACCAAGGAAGTTCAGGGACAGAAAGCACTCCTGTTAAACAAA TGGAATTGCATGGGGAGAAGGAAGGGGTTAACCGGAAAAGCATACCTGTGCAGCAAATGGAAGCATTTAGGGAGAAGGAAGATTCTGAAGGCATTGGTAA GAGAGGTAGAACTGCCTCTTTGAAAAATGCAGAAGGTAACCCAACTGGTAACTCTTCTGAGACCTGTGCAAAAAGACAATCCTTAGCCCCCCCAAAGGCA TCGAAGTTACCTCCTGTTTGTTTAAGAGTTGACCCATTGCCTAAGAAGAAGAATGGAAGTTCAGGCTCAAGGTCTCCTAGTCCTCCAGGGTCAAAAGGTC AGCTGCAGGAGGCATCAAAGGACACTTATAAACCTTCTGCTTCATCAGATTTAAAAGCAAATATCCATCATGACGCACAAGTTCAGAATGTTGCTCTAAG TAGTGGCAAGGAGGTAGAAGCAAATAAAAATGAAGGGAAAATCATAGAGGTCGTGCAGAGGAGACGTATTGAAAACAAGGATGGTGAAGCAAGGAATGAA TCTCAAACTCAGACTCCAATTGCCTTAACAGATCTTCAAAAGGAGGTCTTCAGAAACCCAAAAGCAGAGGAAGCTGAAACTTATGATGACAAATACGTAA AAAAAGAGGATCAAGGAGCAAGAGATGCTAAAGATTTGGCAGCTGGTGAAGCAACCAAGTCAAAGGAAGTAACAGATGCAACCAGATCAGCAATTGATGA AAATAAAGAACAGAGAAAGAACTTATCAGATGAAGCAGCCGCCTTGCTTATACAATCAGCTTATCGTGGGTTTGAAGTGAGGAGATGGGAACCTTTGAAG AAATTAAAGCAAATTGCTAAGGTCCAGGAGCAGTTAGTTGTGGTTAAAGATAAGATTTATGCTCTCGAGTCCTCTTCTGACCTCCAGAAAGATGATCAGC AAAGGCTAGTCATTGGAGAAATGATAATGAGCCTTCTGCTGAAATTGGACGCTATCCAGGGCTTGCATCCAACTATCAGGGATATCAGGAAATCCTTAGC AAGGGAACTTGTAGCTCTACAGGAGAAGCTTGATTCACTCATCATGAAGAAGTGCGAGGAAACTTCTGGCTCCAAAAATTCTGAGGACCATCTCGTCACT TCCAGTGTCATTACAGCAGACCAAGATGCACAAAAAATGGAGGTAGGAGAACAGCCAGGTTACTGTCTTTCTCAAATGGTGGACTCCGTAGGTGACTCGG AGGATAAGGAAACTTCAAAGTCTCCTATTATTATCAAAGATGAGCACAGGGAATCTGAAAATGAAGGTAGGGAGGTCGAAATTGATGGAGGGTCTTATGT GGCAGAGCAAGAAAACAAGGTTGGCAGTGGAGAGTTCCAATCTAGTGAAGTTGTTATGACAGAGAATGGGCAGGGAATGTCAGCAATTGAACAATCTGTC CTATCCCAGTCACAGGAAAGAGATAAAGGGGAGATCAGGGGAATTCTACCAGAGAATATGTGCTGCAGTCCACATAACAAGCAACAAGCTGGATTGATGA AACTGACCAGTGTAGAAAATAGTCCTGAAGTGAAAGGAACTGAAGCACCGGCACATGAAATAAGTGGGAAGGTGGCTGCCATTTCTGATAAAGAGGAAGA ATGTGGAACAGAAATGGTGGCAGTCATAGATGGTGAGGAGATGGAATCAAATGCACCATGGTCATCTTCAACTGCTGACTCTCCTGATTCGACAACTGCT GCAAAAACTATAGATGTAAATTTGCTACAAGAATTCCCATTAGGGCTGATTGATGACGAGGCACCAGAGAAATTGGACAACTCGAATATTCAGGAGAATG AAGTTCGATGTGGTGGAGACAATAAAGAAGATACAGAACCGTCTTCATTAAATGAGGTAATAATCCCAATTGAGCTAGAGCACCAGTGCATGGAAGTGCT TAATAAAGGGGCTTTTCTTGCTGGATCAGAGGATTCAGTGAAGGTTGGCCCTGAAATGGATGACAGCCATGAAGATGCAATGGTTGGGATGTGTGCGCAA CAACCTCAAGCATTAGATGTCAAAAATGATGAGGAACAAGTGGAAGTACTTGGACAGGAAAAGGTGCTAGACTTTTCCCGGGAACAAGAGGGAAGCAATG AAGAAAAGCAGAAAGATGGACACAGCTGCTCTTCTGAATTAGCAAACAAGATCTTTTCTCAAGAGGAGGAAGTGCAAGCTGAGGAAGAAAAAGACAACGA TTGCCAGCCAATAACAGATTGTGGAAATGAAGAAATGAAGTTGGAAGTAGAGCAATGCCATGATCTAGGGGTCTTGAGTGACAATGACACCATGGAAGAT CGGCTGGATGGATCAGAAACCACCAAGAGTTTATCCGTGATTGGACCGAAACTTTCTCCAATGGGTGCAGAGTATGATGAAGAGAAAGGAGAGGAACTGC CTGCATCATCCACTGCCATTTCTAGCCAGGTATCTGCTGATGAACAGGGGATGGGAATGGAAAGTCAGAGAAAGCTGGTTGATGAGAATGAGAAACTGAG AGAGATGATGGAGCGATTAATTGAGACAGGAAAGGATCAGTTGACTGTTATATCCAATCTGACCGAGAGAGTGAAAGATTTGGAGAAAAAACTGTCCAAG AAGAAGAAAGTATGGGCAAAACGAACTCCACCTTCCAGTGCAAGGCCATTAGTCAAGTCCGCAAGGAGAAAAGCTGGTGTTTCAACTTAA
AA sequence Show only first row Show all	>Potri.002G166300.2 pacid=42778918 polypeptide=Potri.002G166300.2.p locus=Potri.002G166300 ID=Potri.002G166300.2.v4.1 annot-version=v4.1 MMPVYRYMDSHPMRGDHVPPMQHYHPSIGAVPPHMHVDPSKSAALYGFCPYGNNFGYSVPCHACCGHGNFTGYYGPRPSCSHFPPPQYQCYGYPPYHETM PVQYVPSPHYSMEQPRYEYDKVVSSNNHCCGCRSHTHDQKSDESVKVEELDPDSQKKEGDSLVPFQVKNYPYPVVWIPPDKIKNEEDRKPVDSEMASGEK ASRVMKPPESVKPPEEKTRVWNGWVPLDLKSFGPFMQAEDQKRTQNHQNEDELQQFPFPIFWLPPYNKQNDTSNKDGAQTIASSKPVDEPPSAVKFFPVK LPGSSDGSNKLLEGQYNSRDQGSSGTESTPVKQMELHGEKEGVNRKSIPVQQMEAFREKEDSEGIGKRGRTASLKNAEGNPTGNSSETCAKRQSLAPPKA SKLPPVCLRVDPLPKKKNGSSGSRSPSPPGSKGQLQEASKDTYKPSASSDLKANIHHDAQVQNVALSSGKEVEANKNEGKIIEVVQRRRIENKDGEARNE SQTQTPIALTDLQKEVFRNPKAEEAETYDDKYVKKEDQGARDAKDLAAGEATKSKEVTDATRSAIDENKEQRKNLSDEAAALLIQSAYRGFEVRRWEPLK KLKQIAKVQEQLVVVKDKIYALESSSDLQKDDQQRLVIGEMIMSLLLKLDAIQGLHPTIRDIRKSLARELVALQEKLDSLIMKKCEETSGSKNSEDHLVT SSVITADQDAQKMEVGEQPGYCLSQMVDSVGDSEDKETSKSPIIIKDEHRESENEGREVEIDGGSYVAEQENKVGSGEFQSSEVVMTENGQGMSAIEQSV LSQSQERDKGEIRGILPENMCCSPHNKQQAGLMKLTSVENSPEVKGTEAPAHEISGKVAAISDKEEECGTEMVAVIDGEEMESNAPWSSSTADSPDSTTA AKTIDVNLLQEFPLGLIDDEAPEKLDNSNIQENEVRCGGDNKEDTEPSSLNEVIIPIELEHQCMEVLNKGAFLAGSEDSVKVGPEMDDSHEDAMVGMCAQ QPQALDVKNDEEQVEVLGQEKVLDFSREQEGSNEEKQKDGHSCSSELANKIFSQEEEVQAEEEKDNDCQPITDCGNEEMKLEVEQCHDLGVLSDNDTMED RLDGSETTKSLSVIGPKLSPMGAEYDEEKGEELPASSTAISSQVSADEQGMGMESQRKLVDENEKLREMMERLIETGKDQLTVISNLTERVKDLEKKLSK KKKVWAKRTPPSSARPLVKSARRKAGVST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G46240		ATBAG6, BAG6	ARABIDOPSIS THALIANA BCL-2-ASS...		Potri.002G166300 [exp]	0	1
AT3G12580		ATHSP70, HSP70	ARABIDOPSIS HEAT SHOCK PROTEIN...		Potri.001G042600 [exp]	1.00	0.9988	HSP70.9
AT5G59720		HSP18.2 HSP18.1...	heat shock protein 18.2 (.1)		Potri.010G195700 [exp]	1.41	0.9966	Pt-HSP18.4
AT1G74310		HOT1, ATHSP101	heat shock protein 101 (.1)		Potri.015G056900 [exp]	3.00	0.9956	Pt-ATHSP101.1
AT2G29500			HSP20-like chaperones superfam...		Potri.009G049800 [exp]	3.46	0.9948	Pt-HSP17.9
AT2G29500			HSP20-like chaperones superfam...		Potri.019G081200 [exp]	4.89	0.9881	Pt-HSP17.5
AT3G12580		ATHSP70, HSP70	ARABIDOPSIS HEAT SHOCK PROTEIN...		Potri.001G042700 [exp]	5.00	0.9928	Pt-HSP70.10
AT1G74310		HOT1, ATHSP101	heat shock protein 101 (.1)		Potri.015G057000 [exp]	5.47	0.9908
AT2G29500			HSP20-like chaperones superfam...		Potri.009G147900 [exp]	9.00	0.9872
AT5G15250		FTSH6, ATFTSH6	FTSH protease 6 (.1.2)		Potri.017G084000 [exp]	9.79	0.9797
AT5G20620		UBQ4	ubiquitin 4 (.1)		Potri.006G129600 [exp]	10.67	0.9684	SUBI.10

Compare expression of checked genes

Potri.002G166300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.