Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61590 542 / 0 HWS, HS HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) AT1G27340 102 / 1e-23 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G15710 100 / 6e-23 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G30950 92 / 4e-20 UFO UNUSUAL FLORAL ORGANS, F-box family protein (.1) AT4G33160 67 / 7e-12 F-box family protein (.1) AT5G42350 56 / 3e-08 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G42360 56 / 3e-08 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G49610 55 / 3e-08 F-box family protein (.1) AT3G56470 54 / 6e-08 F-box family protein (.1) AT1G49360 47 / 2e-05 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G093200 [exp] 752 / 0 AT3G61590 538 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.004G112400 [exp] 103 / 6e-24 AT5G15710 753 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G160900 [exp] 103 / 6e-24 AT1G30950 554 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Potri.001G057100 [exp] 101 / 2e-23 AT1G27340 613 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.017G102300 [exp] 101 / 3e-23 AT5G15710 744 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.003G074100 [exp] 96 / 3e-21 AT1G30950 528 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Potri.003G171300 [exp] 93 / 2e-20 AT1G27340 628 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.006G217500 [exp] 78 / 1e-15 AT4G33160 419 / 9e-145 F-box family protein (.1) Potri.002G118700 [exp] 68 / 2e-12 AT5G43190 352 / 7e-120 Galactose oxidase/kelch repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003029 [exp] 617 / 0 AT3G61590 531 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10007855 [exp] 612 / 0 AT3G61590 531 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10031955 [exp] 102 / 2e-23 AT5G15710 719 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10035147 [exp] 101 / 5e-23 AT5G15710 721 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10015775 [exp] 94 / 1e-20 AT1G27340 598 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10018690 [exp] 92 / 5e-20 AT1G30950 514 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Lus10037030 [exp] 89 / 7e-19 AT1G27340 615 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10007755 [exp] 87 / 2e-18 AT1G30950 514 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Lus10007740 [exp] 73 / 9e-14 AT5G43190 292 / 2e-94 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10013215 [exp] 62 / 4e-10 AT5G42350 647 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF12937 [poplar] [flax] F-box-like F-box-like
Representative CDS sequence Show only first row Show all	>Potri.002G166500.3 pacid=42779190 polypeptide=Potri.002G166500.3.p locus=Potri.002G166500 ID=Potri.002G166500.3.v4.1 annot-version=v4.1 ATGGAGGGAGAAACGTCTTGGGTAATTAATTGTTTTGAGGACTCAACAAGGGGCATTGGTGAATTTGATTCATTCTCTGAACTTAGCGATGAAGGCAGTA AAGAAGTTAATGCTGTTTCAGTTGATTTAATCTTGCCTGATGATCTGCTAGAACGAATCCTAGCTTGTCTCCCCGTTGCTAGCATCTTCAGAGCTGGCTG TGTGTGTAAAAGATGGCATGAGATTGTTAGTTCAAGGAGGTTTTTATGGAACTTCTCGCATGTCCTGCCACAAAAACCTTGGTATTTTATGTTCACAAGC TCAGATGAACCTGTTGGCTATGCCTTTGATCCAGTCCTTCGAAAATGGTATGGCATTGATCTTCCCCGCATCAAGACATCTAATTGGTTCATTGCTTCAT CATGTGGCTTGGTTTCCTTCATGGACAATGACACCAGAAGCGAGTTGTATGTCTGCAACCCTATCACCAAACACTGCAGGAAGCTTCAGGAGTCCCCAGG TTTAAAATTTCCTGATTACAGTGCACTTGCTATTTCTGTGAACCGGATATCACATGGTTATACTATCTCAATTGTGAAGTCTAAGCAAGTCCCTGGGAAT TTTTTCCAATGGGATCTCTCTATCCACATTTATGATTCTGATACGAGGATGTGGGTAACTTCTTGCACAGAGGTTTTGACAGGATGGAGAGGTGGTGATG AGAGTGTAATCTGTGGTGGGTTTTTATACGTTTTGATATATTCTGCAGGAGGTGGCTCCCCAGAAACCCGTCATGGTCTGATTACATACAATCTATCCAG CAGATCTTCTAATGGCTTGTTGATAAGAAGTTTTATCAAAGTACCTTGTCCTCTTACTTGTGGCCGTCTGATGAATTTGAATGAGAAGCTTGTAATGGTG GGAGGAATTGGTAAACAAGACCGGCCTGACATAATAAAGGGGATTGGCATCTGGGTTCTAAATGGCAAGGACTGGCAAGAGATTGCCCGAATGCCCCATA AGTGTTTCCAAGGATTTGGGGAGTTGGATGATGTTTTTGCAAGTAGCGGTACGGATAATCTCATATACATCCAGAGCTATGGGGCTCCAGCTCTTCTTGT TTTTGACTTTAACCAGAAACAATGGAAGTGGTCACAAAAGTGCCCAGTGACAAAGAGGTTCCCTCTTCAGCTCTTTACTGGTTTTTGCTTTGAACCTAGG ATTGAGATGGCACCATAA
AA sequence Show only first row Show all	>Potri.002G166500.3 pacid=42779190 polypeptide=Potri.002G166500.3.p locus=Potri.002G166500 ID=Potri.002G166500.3.v4.1 annot-version=v4.1 MEGETSWVINCFEDSTRGIGEFDSFSELSDEGSKEVNAVSVDLILPDDLLERILACLPVASIFRAGCVCKRWHEIVSSRRFLWNFSHVLPQKPWYFMFTS SDEPVGYAFDPVLRKWYGIDLPRIKTSNWFIASSCGLVSFMDNDTRSELYVCNPITKHCRKLQESPGLKFPDYSALAISVNRISHGYTISIVKSKQVPGN FFQWDLSIHIYDSDTRMWVTSCTEVLTGWRGGDESVICGGFLYVLIYSAGGGSPETRHGLITYNLSSRSSNGLLIRSFIKVPCPLTCGRLMNLNEKLVMV GGIGKQDRPDIIKGIGIWVLNGKDWQEIARMPHKCFQGFGELDDVFASSGTDNLIYIQSYGAPALLVFDFNQKQWKWSQKCPVTKRFPLQLFTGFCFEPR IEMAP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G61590		HWS, HS	HAWAIIAN SKIRT, Galactose oxid...		Potri.002G166500 [exp]	0	1
AT1G54790			GDSL-like Lipase/Acylhydrolase...		Potri.005G038850 [exp]	10.09	0.6677
AT2G32700		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_ho...		Potri.001G049400 [exp]	10.72	0.5926
AT5G61500		ATATG3	autophagy 3 (APG3) (.1)		Potri.003G107000 [exp]	18.02	0.5907
AT2G02540	ZF_HD	ATHB21, ZFHD4, ...	ZINC FINGER HOMEODOMAIN 3, ZIN...		Potri.019G021400 [exp]	21.16	0.6043
AT2G03890		UBDKGAMMA7, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Potri.010G137400 [exp]	23.04	0.6673
AT4G07990			Chaperone DnaJ-domain superfam...		Potri.005G146600 [exp]	30.49	0.6057
AT1G67300			Major facilitator superfamily ...		Potri.018G083200 [exp]	30.85	0.6350
AT2G01260			Protein of unknown function (D...		Potri.010G120700 [exp]	31.74	0.6019
AT1G78070			Transducin/WD40 repeat-like su...		Potri.005G168600 [exp]	32.64	0.6073
AT4G36860		DAR1	DA1-RELATED PROTEIN 1, LIM dom...		Potri.005G128800 [exp]	32.86	0.5884

Compare expression of checked genes

Potri.002G166500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.