Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ATPOB1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61600 930 / 0 ATPOB1 POZ/BTB containin G-protein 1 (.1.2) AT2G46260 913 / 0 BTB/POZ/Kelch-associated protein (.1) AT4G01160 568 / 0 BTB/POZ/Kelch-associated protein (.1) AT2G30600 57 / 2e-08 BTB/POZ domain-containing protein (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G093700 [exp] 1079 / 0 AT3G61600 945 / 0.0 POZ/BTB containin G-protein 1 (.1.2) Potri.003G135300 [exp] 797 / 0 AT3G61600 733 / 0.0 POZ/BTB containin G-protein 1 (.1.2) Potri.001G096100 [exp] 790 / 0 AT3G61600 655 / 0.0 POZ/BTB containin G-protein 1 (.1.2) Potri.001G468700 [exp] 48 / 8e-06 AT1G55760 522 / 0.0 BTB/POZ domain-containing protein (.1) Potri.002G010100 [exp] 44 / 0.0002 AT2G30600 1110 / 0.0 BTB/POZ domain-containing protein (.1.2.3.4.5)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032340 [exp] 843 / 0 AT3G61600 827 / 0.0 POZ/BTB containin G-protein 1 (.1.2) Lus10017545 [exp] 835 / 0 AT3G61600 820 / 0.0 POZ/BTB containin G-protein 1 (.1.2) Lus10024723 [exp] 785 / 0 AT3G61600 759 / 0.0 POZ/BTB containin G-protein 1 (.1.2) Lus10028744 [exp] 750 / 0 AT3G61600 744 / 0.0 POZ/BTB containin G-protein 1 (.1.2) Lus10016014 [exp] 49 / 1e-05 AT2G30600 1131 / 0.0 BTB/POZ domain-containing protein (.1.2.3.4.5) Lus10012262 [exp] 47 / 6e-05 AT2G30600 1117 / 0.0 BTB/POZ domain-containing protein (.1.2.3.4.5) Lus10008348 [exp] 45 / 0.0001 AT1G55760 516 / 0.0 BTB/POZ domain-containing protein (.1) Lus10027101 [exp] 42 / 0.0008 AT1G55760 389 / 3e-136 BTB/POZ domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [poplar] [flax] POZ PF00651 [poplar] [flax] BTB BTB/POZ domain CL0033 [poplar] [flax] POZ PF07707 [poplar] [flax] BACK BTB And C-terminal Kelch
Representative CDS sequence Show only first row Show all	>Potri.002G166700.2 pacid=42779262 polypeptide=Potri.002G166700.2.p locus=Potri.002G166700 ID=Potri.002G166700.2.v4.1 annot-version=v4.1 ATGTTGAGAGGGTCAAATACGGATCTGTTTGACCCGAGAACGGAGATGGACTCCGATTTTACGCGTGGAAGCTCAGCTTCCGATGGAGATTTCGGGTTTG CTTTTAACGATAGTAATTTCTCTGACCGGCTTCTGCGGATCGAGATCATGGGTGGCTCGGCTGAGAATAGAGCCGATGGTGAAGGTTGTACTAGTATCAT TGATTGGGCCAGGCATCGTAAGAGGAGGAGAGAAGATATCAAGAAGGATATTAATAATGGCGATCTCTCTGTAGGTGCAGAGGAGCAGATTTTAGGTAGT ATCCAACCTGACATGGATGATTGTGTGGGGTGTGACAATCAGGATGAGGAAGCAGAGGCAATGGTTGAAGGGTCACCTTCAGGTGATGAAGCTGCAGATG GCACCGAGTCATCTTGGAGCATGGATTGCTCTACAGTTGTGAGAGTTAAAACATTACACATTAGCTCTCCTATTTTAGCTGCCAAAAGTCCATTTTTCTA CAAGCTATTCTCAAATGGAATGAGGGAGTCAGAACAGCGGCATGTGACACTACGCATCAACGCCTCTGAGGAAGCAGCCCTTATGGAGTTACTGAATTTT ATGTACAGCAATACACTAACTGCTTCTCAGGCTCCCCAATTACTTGACGTGCTAATGGCTGCTGACAAGTTTGAGGTAGCTTCATGCATGAGGTATTGCA GTCGACAATTGCGTAACCTACCCATGAAGCCAGAGTCTGCTTTGCTTTATCTGGAGCTTCCATCCAGTGTCTTGATGGCTGAAGCTGTCCAGCCATTAAC TGATGCAGCAAAGCAATACCTTGCAGCCCGTTACAAGGACATGACCAAGTTCCAAGAAGAGGTGATGGCACTTCCCTTGGCTGGAATTGAAGCAATACTG TCTAGTGATGACCTGCAGGTGGCTTCAGAAGATGCTGTGTATGACTTTGTGTTGAAGTGGGCTAGGGCTCAGTATCCAAGATTGGAAGAGCGGCGTGAAG TCCTGGGAGCACGCCTAGCACGCTATATTCGCTTCCCTTACATGACTTGCCGGAAGCTTAAGAAGGTTTTAACTTGTACTGACTTTGAGCACGACGCTGC ATCCAAGCTTGTGCTTGAGGCTCTCTTTTTTAAGGGTGAGCCACCACACCGGCAGCGAACCCTGGCAGCAGAGGAATCAGCCACCTTGAATCGTCGTTTT GTGGAGCGTGCATACAAGTATCGGCCTGTAAAAGTGGTAGAGTTTGAACTGCCCAGGCAGCAGTGTGTGGTGTACCTGGACCTGAAACGGGAGGAATGTG TCAATTTGTTCCCTTCTGGACGGGTATACTCTCAGGCATTCCACCTGGGTGGACAGGGGTTTTTCTTGTCAGCACATTGCAACATGGACCAGCAAAGCTC TTTTCATTGCTTTGGTCTGTTTCTAGGGATGCAGGAGAAGGGGTCAGTTAGTTTTGCTGTCGACTATGAATTTGCAGCTAGGTCGAAGCCAACAGAGGAG TTTGTTAGCAAATACAAGGGAAATTACACGTTCACTGGTGGCAAGGCAGTTGGCTACCGAAACTTATTTGCCATACCATGGACTTCCTTCATGGCTGAGG ATAGTCCTTATTTCATAAATGGCGTCTTGCATCTTAGAGCGGAGCTTACTATCAGGCACTAA
AA sequence Show only first row Show all	>Potri.002G166700.2 pacid=42779262 polypeptide=Potri.002G166700.2.p locus=Potri.002G166700 ID=Potri.002G166700.2.v4.1 annot-version=v4.1 MLRGSNTDLFDPRTEMDSDFTRGSSASDGDFGFAFNDSNFSDRLLRIEIMGGSAENRADGEGCTSIIDWARHRKRRREDIKKDINNGDLSVGAEEQILGS IQPDMDDCVGCDNQDEEAEAMVEGSPSGDEAADGTESSWSMDCSTVVRVKTLHISSPILAAKSPFFYKLFSNGMRESEQRHVTLRINASEEAALMELLNF MYSNTLTASQAPQLLDVLMAADKFEVASCMRYCSRQLRNLPMKPESALLYLELPSSVLMAEAVQPLTDAAKQYLAARYKDMTKFQEEVMALPLAGIEAIL SSDDLQVASEDAVYDFVLKWARAQYPRLEERREVLGARLARYIRFPYMTCRKLKKVLTCTDFEHDAASKLVLEALFFKGEPPHRQRTLAAEESATLNRRF VERAYKYRPVKVVEFELPRQQCVVYLDLKREECVNLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARSKPTEE FVSKYKGNYTFTGGKAVGYRNLFAIPWTSFMAEDSPYFINGVLHLRAELTIRH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G61600		ATPOB1	POZ/BTB containin G-protein 1 ...		Potri.002G166700 [exp]	0	1	ATPOB1.2
AT3G52880		ATMDAR1	monodehydroascorbate reductase...		Potri.006G114800 [exp]	3.46	0.6601	MDHAR1.1
AT1G23260		MMZ1 ,UEV1A	UBIQUITIN E2 VARIANT 1A, MMS Z...		Potri.010G107700 [exp]	34.92	0.6114
AT1G43130		LCV2	like COV 2 (.1)		Potri.002G065800 [exp]	116.83	0.5713
AT1G60810		ACLA-2	ATP-citrate lyase A-2 (.1)		Potri.008G188900 [exp]	142.59	0.5849	Pt-ACLA.1
AT2G14260		PIP	proline iminopeptidase (.1.2)		Potri.001G287700 [exp]	219.69	0.5562

Compare expression of checked genes

Potri.002G166700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.