Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01140 162 / 8e-48 Protein of unknown function (DUF1191) (.1) AT3G08600 152 / 4e-44 Protein of unknown function (DUF1191) (.1) AT4G23720 135 / 2e-37 Protein of unknown function (DUF1191) (.1) AT4G11950 93 / 9e-22 Protein of unknown function (DUF1191) (.1) AT4G22900 84 / 4e-18 Protein of unknown function (DUF1191) (.1) AT1G62981 77 / 7e-16 Protein of unknown function (DUF1191) (.1), Protein of unknown function (DUF1191) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G094000 [exp] 487 / 1e-175 AT4G01140 140 / 2e-39 Protein of unknown function (DUF1191) (.1) Potri.001G096000 [exp] 220 / 2e-70 AT4G23720 209 / 4e-66 Protein of unknown function (DUF1191) (.1) Potri.003G135400 [exp] 211 / 7e-67 AT4G23720 190 / 1e-58 Protein of unknown function (DUF1191) (.1) Potri.016G141100 [exp] 173 / 4e-52 AT3G08600 176 / 7e-53 Protein of unknown function (DUF1191) (.1) Potri.006G111700 [exp] 172 / 1e-51 AT3G08600 249 / 1e-81 Protein of unknown function (DUF1191) (.1) Potri.001G112800 [exp] 125 / 1e-33 AT1G62981 213 / 8e-67 Protein of unknown function (DUF1191) (.1), Protein of unknown function (DUF1191) (.2) Potri.003G119400 [exp] 114 / 2e-29 AT4G11950 227 / 9e-73 Protein of unknown function (DUF1191) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028743 [exp] 180 / 7e-55 AT4G23720 178 / 6e-54 Protein of unknown function (DUF1191) (.1) Lus10017546 [exp] 174 / 2e-52 AT4G23720 181 / 5e-55 Protein of unknown function (DUF1191) (.1) Lus10007859 [exp] 174 / 2e-52 AT4G01140 115 / 9e-30 Protein of unknown function (DUF1191) (.1) Lus10003033 [exp] 127 / 3e-34 AT4G01140 89 / 6e-20 Protein of unknown function (DUF1191) (.1) Lus10024479 [exp] 86 / 5e-19 AT4G11950 230 / 1e-73 Protein of unknown function (DUF1191) (.1) Lus10006713 [exp] 84 / 3e-18 AT4G11950 181 / 2e-54 Protein of unknown function (DUF1191) (.1) Lus10001191 [exp] 84 / 3e-18 AT4G22900 224 / 2e-71 Protein of unknown function (DUF1191) (.1) Lus10014139 [exp] 75 / 2e-15 AT4G22900 169 / 1e-50 Protein of unknown function (DUF1191) (.1) Lus10014138 [exp] 73 / 1e-14 AT4G11950 237 / 1e-76 Protein of unknown function (DUF1191) (.1) Lus10006712 [exp] 73 / 2e-14 AT4G11950 226 / 3e-72 Protein of unknown function (DUF1191) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0661 [poplar] [flax] Gain PF06697 [poplar] [flax] DUF1191 Protein of unknown function (DUF1191)
Representative CDS sequence Show only first row Show all	>Potri.002G166900.2 pacid=42778260 polypeptide=Potri.002G166900.2.p locus=Potri.002G166900 ID=Potri.002G166900.2.v4.1 annot-version=v4.1 ATGGGGCGAAACAGAAGCGGGCACATCATCACAACCTATGTGATCTTTCCTCTGCTCTTGTTATTATTTTCACCTGTTCATGGCTTAACAAGCTATGACC CGGAGTCTTTAGATGCATTGATTCATAAACACGCAATGAAGGCACAAGCAAAGAAACGTACAGGTACTTCATTACAAGTCTCTCTCCCTGCTAATTTCTC TGGAATCGAAGTCTCAGTTGTTAGGCTAAGAAGTGGTCATTTCTGGGAAAGAGGAGTCAATTTCAGTTCTTTTTATATCCCGCCAAGGGTTCTTCCATTC CCATTTGTGAAGAGACTATCTATAGTATACCAGAACTTGGGGAATTGGTCTACTCGTTATTACAAGGTGCCTGATTATTCATTAGTTGCTCCTGTTGTTG GCTTCATGGCTTACGATGCTTCAAATTTAAGTGCACTGGGTAATGAAGCACTCAAGTTTAGCATTCTGGGTGGCCCCATTTTGATCAGCTTTCCTAACCT TGAGATAAAAGGTAAGCTTGAGACATTAAAATGCGTCAAACTTGGTCCAGATGGATTTGTCCAATTCAGGAACATAACCAAGGGAAACACCTGCATCACA CAAGGTGATGGTCATTTTTCACTTGCTGTTCAAAATCCTGAAGTAGAGAAGAATATCAGAGTATGGAAATGGTATGTGGTTGGATTTGGAGCTGGGTTTT TTGCATTGGTTTTGTCGGGTGTGATTGGATACACCACTTTTAAACTAGTGAGGAGTAAGAAATTAAGAGGAATGGAAGCAGAGTCTGAAAATGGGGTGGC TCTTGATGCAACTTCAGTCGGAAGAAGTAAGATGCCTTCAGCATCAATGGTAAGAACCCAGCCAACCCTTGAGCAAGACTATGTTCCTTGA
AA sequence Show only first row Show all	>Potri.002G166900.2 pacid=42778260 polypeptide=Potri.002G166900.2.p locus=Potri.002G166900 ID=Potri.002G166900.2.v4.1 annot-version=v4.1 MGRNRSGHIITTYVIFPLLLLLFSPVHGLTSYDPESLDALIHKHAMKAQAKKRTGTSLQVSLPANFSGIEVSVVRLRSGHFWERGVNFSSFYIPPRVLPF PFVKRLSIVYQNLGNWSTRYYKVPDYSLVAPVVGFMAYDASNLSALGNEALKFSILGGPILISFPNLEIKGKLETLKCVKLGPDGFVQFRNITKGNTCIT QGDGHFSLAVQNPEVEKNIRVWKWYVVGFGAGFFALVLSGVIGYTTFKLVRSKKLRGMEAESENGVALDATSVGRSKMPSASMVRTQPTLEQDYVP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G01140			Protein of unknown function (D...		Potri.002G166900 [exp]	0	1
AT3G51930			Transducin/WD40 repeat-like su...		Potri.001G022900 [exp]	2.82	0.7939
AT1G45688			unknown protein		Potri.014G026800 [exp]	8.24	0.7855
AT1G25510			Eukaryotic aspartyl protease f...		Potri.008G118100 [exp]	9.64	0.7811
AT4G25240		SKS1	SKU5 similar 1 (.1)		Potri.015G127200 [exp]	9.89	0.7740	SKS1.3
AT3G12580		ATHSP70, HSP70	ARABIDOPSIS HEAT SHOCK PROTEIN...		Potri.008G054733 [exp]	23.83	0.7173
AT5G62170			unknown protein		Potri.012G132900 [exp]	26.38	0.7205
AT2G25280			unknown protein		Potri.006G258200 [exp]	28.35	0.7182
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Potri.008G139500 [exp]	54.69	0.6960	Pt-ANN5.2
AT4G36950		MAPKKK21	mitogen-activated protein kina...		Potri.003G184200 [exp]	54.79	0.7676
AT5G13870		EXGT-A4, XTH5, ...	endoxyloglucan transferase A4,...		Potri.001G071000 [exp]	60.00	0.7127	EXGT.1

Compare expression of checked genes

Potri.002G166900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.