Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61610 513 / 0 Galactose mutarotase-like superfamily protein (.1) AT4G23730 430 / 8e-153 Galactose mutarotase-like superfamily protein (.1) AT5G57330 423 / 6e-150 Galactose mutarotase-like superfamily protein (.1) AT3G01590 369 / 2e-128 Galactose mutarotase-like superfamily protein (.1.2) AT5G14500 367 / 1e-127 aldose 1-epimerase family protein (.1) AT4G25900 325 / 4e-111 Galactose mutarotase-like superfamily protein (.1) AT5G66530 142 / 6e-40 Galactose mutarotase-like superfamily protein (.1.2) AT1G55370 50 / 6e-07 NDF5 NDH-dependent cyclic electron flow 5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G095300 [exp] 468 / 1e-167 AT3G61610 461 / 3e-165 Galactose mutarotase-like superfamily protein (.1) Potri.018G089800 [exp] 451 / 8e-161 AT5G57330 513 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.006G165400 [exp] 450 / 1e-160 AT5G57330 525 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.001G037700 [exp] 426 / 5e-151 AT5G57330 483 / 2e-173 Galactose mutarotase-like superfamily protein (.1) Potri.003G187300 [exp] 420 / 1e-148 AT5G57330 475 / 3e-170 Galactose mutarotase-like superfamily protein (.1) Potri.001G344100 [exp] 386 / 3e-135 AT5G14500 501 / 0.0 aldose 1-epimerase family protein (.1) Potri.007G023200 [exp] 143 / 3e-40 AT5G66530 483 / 1e-173 Galactose mutarotase-like superfamily protein (.1.2) Potri.019G034000 [exp] 58 / 3e-09 AT1G55370 267 / 9e-87 NDH-dependent cyclic electron flow 5 (.1.2) Potri.019G034100 [exp] 41 / 0.0006 AT1G64770 417 / 3e-146 Photosynthetic NDH subcomplex B 2, NAD\(P\)H DEHYDROGENASE SUBUNIT 45, NDH-dependent cyclic electron flow 1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010131 [exp] 539 / 0 AT3G61610 518 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10012640 [exp] 529 / 0 AT3G61610 511 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10028739 [exp] 477 / 3e-171 AT4G23730 474 / 1e-170 Galactose mutarotase-like superfamily protein (.1) Lus10003035 [exp] 476 / 9e-171 AT3G61610 476 / 6e-171 Galactose mutarotase-like superfamily protein (.1) Lus10005147 [exp] 476 / 9e-171 AT3G61610 476 / 6e-171 Galactose mutarotase-like superfamily protein (.1) Lus10017549 [exp] 474 / 5e-170 AT4G23730 475 / 1e-170 Galactose mutarotase-like superfamily protein (.1) Lus10020015 [exp] 431 / 1e-152 AT5G57330 534 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10015540 [exp] 424 / 3e-150 AT5G57330 522 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10041629 [exp] 412 / 1e-145 AT5G57330 479 / 4e-172 Galactose mutarotase-like superfamily protein (.1) Lus10026106 [exp] 411 / 5e-145 AT5G57330 484 / 1e-173 Galactose mutarotase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [poplar] [flax] Gal_mutarotase PF01263 [poplar] [flax] Aldose_epim Aldose 1-epimerase
Representative CDS sequence Show only first row Show all	>Potri.002G167200.1 pacid=42779212 polypeptide=Potri.002G167200.1.p locus=Potri.002G167200 ID=Potri.002G167200.1.v4.1 annot-version=v4.1 ATGAGGCATTCTGCAGCTGTATGGGATTATAGAGCAGCAATTGAGCATACCAAAGACTGGAACGGTATGGACCAGGTCGTGCTCCGCAACCCACAAGGAG CTTCCGCGCGGGTTAGTCTGCATGGAGGGCAAGTTTTTTCATGGAGGAATGAGCAAGGGGAAGAACTTCTATTCACAAGCAGTAAGGGGATCTTTAAGCC TCCAAAACAAGTGCGCGGAGGGATCCCTATATGTTTCCCGCAGTTTGGAAACTGTGGATCTCCAGAGCAGCATGGTTTTGCTAGGAGCAAGATTTGGACA GTTGATGACAATCCTCCTCCTTTGCATCCCAATGATTCCCATGGGAAATCCTTCATTGACCTACTGCTTAAACCATCTGAAGAAGACCTGAAGTGCTGGC CTTATAGTTTTGAGCTTCGTCTTAGGGTGTCACTTGCAGCAAATGGAGACTTGGCGCTGACATCAAGAGTTCGGAACATCGACGGAAAACCATTTAGTTT CTCATTTACATATCACACATATTTGTCAGTTTCTGACATAAGTGAAGTGAGGATAGAAGGATTGGAAACACTTGACTACCTAGACAACCTTCAACAAAGA GAACGATTTACAGAACAAGGAGATGCCCTCACTTTTGAATCTGAGGTGGATCGAGTTTATCTCAGTTCTCCCAATGCAATTGCAATCCTCGATCATGGGA GGAAGCGGACATATGTTATTAGAAAGGATGGACTCCCGGATGTAGCGGTGTGGAATCCATGGGAGAAGAAATCAAAAGCAATGGCGGATTTTGGCGATGA AGAGTACAAAAAGATGTTATGTGTCGATGGAGCAGTGGTTGAGAAACCTGTCACCTTGAAGCCAGGTGAGGAATGGACAGGGCTTTTGGTGCTCTCAGCT GTGCCTTCAAGCTTTTGTAGTGAATACTTCGATCTTGAGAGACGAGGTCTTTGA
AA sequence Show only first row Show all	>Potri.002G167200.1 pacid=42779212 polypeptide=Potri.002G167200.1.p locus=Potri.002G167200 ID=Potri.002G167200.1.v4.1 annot-version=v4.1 MRHSAAVWDYRAAIEHTKDWNGMDQVVLRNPQGASARVSLHGGQVFSWRNEQGEELLFTSSKGIFKPPKQVRGGIPICFPQFGNCGSPEQHGFARSKIWT VDDNPPPLHPNDSHGKSFIDLLLKPSEEDLKCWPYSFELRLRVSLAANGDLALTSRVRNIDGKPFSFSFTYHTYLSVSDISEVRIEGLETLDYLDNLQQR ERFTEQGDALTFESEVDRVYLSSPNAIAILDHGRKRTYVIRKDGLPDVAVWNPWEKKSKAMADFGDEEYKKMLCVDGAVVEKPVTLKPGEEWTGLLVLSA VPSSFCSEYFDLERRGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G61610			Galactose mutarotase-like supe...		Potri.002G167200 [exp]	0	1
AT1G53120			RNA-binding S4 domain-containi...		Potri.011G119800 [exp]	2.00	0.7158
AT3G01120		AtCGS1, ATCYS1,...	METHIONINE OVERACCUMULATION 1,...		Potri.017G086500 [exp]	6.63	0.6366	CGS1.1
AT1G50710			unknown protein		Potri.011G090800 [exp]	10.19	0.7236
AT1G72430			SAUR-like auxin-responsive pro...		Potri.001G164300 [exp]	11.18	0.6305
AT4G00750			S-adenosyl-L-methionine-depend...		Potri.002G154400 [exp]	12.00	0.6458
AT4G09810			Nucleotide-sugar transporter f...		Potri.005G196500 [exp]	15.49	0.6894
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Potri.005G253400 [exp]	15.55	0.6547
AT4G28610	GARP	ATPHR1, PHR1	phosphate starvation response ...		Potri.002G257800 [exp]	17.02	0.6223
AT3G02580		BUL1, DWF7, STE...	DWARF 7, BOULE 1, sterol 1 (.1...		Potri.004G097500 [exp]	17.66	0.6611	DWF7.2
AT5G19780		TUA5	tubulin alpha-5 (.1)		Potri.003G220300 [exp]	22.18	0.6927	TUA2

Compare expression of checked genes

Potri.002G167200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.