Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46300 177 / 4e-55 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT1G01453 112 / 5e-30 unknown protein AT4G01110 111 / 2e-29 unknown protein AT1G17620 66 / 2e-12 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT1G65690 51 / 2e-07 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT1G54540 49 / 1e-06 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G36970 47 / 3e-06 NHL25 NDR1/HIN1-like 25 (.1) AT2G30505 47 / 7e-06 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT2G27260 43 / 8e-05 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G06320 42 / 0.0002 NHL3 NDR1/HIN1-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G094400 [exp] 311 / 7e-108 AT2G46300 174 / 8e-54 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G200700 [exp] 75 / 6e-16 AT1G17620 168 / 2e-51 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.003G039400 [exp] 70 / 6e-14 AT1G17620 208 / 1e-66 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.012G145500 [exp] 59 / 5e-10 AT5G36970 238 / 2e-78 NDR1/HIN1-like 25 (.1) Potri.015G148200 [exp] 57 / 2e-09 AT5G36970 227 / 2e-74 NDR1/HIN1-like 25 (.1) Potri.018G052500 [exp] 55 / 7e-09 AT5G11890 198 / 3e-62 EMBRYO DEFECTIVE 3135, unknown protein Potri.006G228600 [exp] 53 / 4e-08 AT5G11890 171 / 4e-52 EMBRYO DEFECTIVE 3135, unknown protein Potri.004G197600 [exp] 49 / 1e-06 AT2G27080 264 / 8e-89 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Potri.016G071200 [exp] 46 / 8e-06 AT3G52460 123 / 2e-33 hydroxyproline-rich glycoprotein family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010130 [exp] 124 / 1e-34 AT2G46300 139 / 2e-40 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10037638 [exp] 72 / 1e-14 AT1G17620 201 / 4e-64 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10015622 [exp] 71 / 3e-14 AT1G17620 196 / 5e-62 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10003824 [exp] 68 / 3e-13 AT1G17620 191 / 5e-60 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10012638 [exp] 56 / 3e-10 AT2G46300 75 / 1e-17 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10034173 [exp] 57 / 1e-09 AT2G27260 149 / 2e-44 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10043411 [exp] 57 / 2e-09 AT2G27260 148 / 6e-44 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10007364 [exp] 52 / 7e-08 AT1G65690 267 / 6e-90 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10026428 [exp] 51 / 2e-07 AT5G11890 209 / 7e-67 EMBRYO DEFECTIVE 3135, unknown protein Lus10031317 [exp] 47 / 4e-06 AT1G54540 231 / 1e-76 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [poplar] [flax] E-set PF03168 [poplar] [flax] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Potri.002G167300.4 pacid=42778548 polypeptide=Potri.002G167300.4.p locus=Potri.002G167300 ID=Potri.002G167300.4.v4.1 annot-version=v4.1 ATGGCCGGCAAGCCAATGAAACCAGTTCTCCAAAGACCACCAGGTTACACAGACCCCAACCTCCAGGCAAAACCTGCCCCGAGACCGCTACCCACAAAGG CATTGCTGCCTCCTTCATTCGAACCAAGGAAAAGACGGTCCAGGCATTGCCGTCTATGCTTATGCTGCTTAAGCCTCCTCCTTATAATCGCCATTCTCCT GATGATTATCGCAGGAGGTCTATTTTACCTCTGGTTCGATCCAAAACTCCCCGTTTTCCACCTCCAATCTTTTAAATTCTCCGCCTTTAACATCACCAAG AGATCAGATGGCACGTACCTTACCGCCAAAATGGTTGCAAGAATCGAAGTTAGGAATCCTAATGAAAATATCATCTATCATTTTGGAGAGTCTAAAGTGG AAACGACAGCGGGAGACGACGAGGTTAATTTGGGATCGACGACCTTGCCTGAGTTCACACAGGGAAAAAAGAATACGACTAGTTTGGAAATTGAAACCAG TGTGAACAATGAGCTGATCGAGGATGGAATTGGATCGAAGATTCTTGATCAGTTCACGAGCAAAAAACTGAAGGTGGATATGGATGTGAAAACGAGCATT GGAATTGGTGTTGAAGGGGTGAAGACAGGGTTGCTGGGAGTGGAAGTTGTGTGTGGAGGTGTAACGTTGAAGGAGACCAGTACTGAGATGCCAAGATGTA TCATAAGCACGCTTAAATGGATTATCATCCGTTGA
AA sequence Show only first row Show all	>Potri.002G167300.4 pacid=42778548 polypeptide=Potri.002G167300.4.p locus=Potri.002G167300 ID=Potri.002G167300.4.v4.1 annot-version=v4.1 MAGKPMKPVLQRPPGYTDPNLQAKPAPRPLPTKALLPPSFEPRKRRSRHCRLCLCCLSLLLIIAILLMIIAGGLFYLWFDPKLPVFHLQSFKFSAFNITK RSDGTYLTAKMVARIEVRNPNENIIYHFGESKVETTAGDDEVNLGSTTLPEFTQGKKNTTSLEIETSVNNELIEDGIGSKILDQFTSKKLKVDMDVKTSI GIGVEGVKTGLLGVEVVCGGVTLKETSTEMPRCIISTLKWIIIR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G46300			Late embryogenesis abundant (L...		Potri.002G167300 [exp]	0	1
AT1G17200			Uncharacterised protein family...		Potri.001G436400 [exp]	2.44	0.8188
AT3G05975			Late embryogenesis abundant (L...		Potri.006G112700 [exp]	3.00	0.8208
AT3G18570			Oleosin family protein (.1)		Potri.012G059400 [exp]	3.87	0.7851
AT4G15800		RALFL33	ralf-like 33 (.1)		Potri.005G025800 [exp]	7.74	0.7401	RALFL23.2
AT2G46800		ATMTP1, ZAT1, Z...	ZINC TRANSPORTER OF ARABIDOPSI...		Potri.001G450900 [exp]	11.40	0.7261
AT5G17050		UGT78D2	UDP-glucosyl transferase 78D2 ...		Potri.013G143900 [exp]	13.26	0.7625	FGT1
AT1G01630			Sec14p-like phosphatidylinosit...		Potri.001G068000 [exp]	17.60	0.7547
AT5G03260		LAC11	laccase 11 (.1)		Potri.009G102700 [exp]	26.98	0.7256
AT1G52855			unknown protein		Potri.019G104100 [exp]	31.30	0.6964
AT1G31812		ACBP6, ACBP	acyl-CoA-binding protein 6 (.1...		Potri.001G130200 [exp]	36.66	0.7170

Compare expression of checked genes

Potri.002G167300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.