Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46320 424 / 3e-148 Mitochondrial substrate carrier family protein (.1.2.3) AT4G27940 400 / 6e-138 ATMTM1 ARABIDOPSIS MANGANESE TRACKING FACTOR FOR MITOCHONDRIAL SOD2, manganese tracking factor for mitochondrial SOD2 (.1) AT4G26180 74 / 3e-14 Mitochondrial substrate carrier family protein (.1) AT5G46800 71 / 1e-13 BOU A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1) AT3G55640 70 / 4e-13 Mitochondrial substrate carrier family protein (.1) AT5G56450 66 / 1e-11 PM-ANT Mitochondrial substrate carrier family protein (.1) AT3G53940 66 / 1e-11 Mitochondrial substrate carrier family protein (.1) AT5G51050 63 / 1e-10 APC2 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) AT5G48970 62 / 2e-10 Mitochondrial substrate carrier family protein (.1) AT2G37890 61 / 3e-10 Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G022700 [exp] 444 / 4e-155 AT4G27940 514 / 0.0 ARABIDOPSIS MANGANESE TRACKING FACTOR FOR MITOCHONDRIAL SOD2, manganese tracking factor for mitochondrial SOD2 (.1) Potri.012G032100 [exp] 439 / 5e-153 AT4G27940 522 / 0.0 ARABIDOPSIS MANGANESE TRACKING FACTOR FOR MITOCHONDRIAL SOD2, manganese tracking factor for mitochondrial SOD2 (.1) Potri.006G226300 [exp] 74 / 2e-14 AT1G14560 476 / 7e-170 Mitochondrial substrate carrier family protein (.1) Potri.006G227100 [exp] 72 / 9e-14 AT5G56450 462 / 4e-165 Mitochondrial substrate carrier family protein (.1) Potri.003G127600 [exp] 71 / 7e-13 AT4G11440 437 / 3e-146 Mitochondrial substrate carrier family protein (.1) Potri.010G024100 [exp] 69 / 1e-12 AT5G48970 528 / 0.0 Mitochondrial substrate carrier family protein (.1) Potri.008G060900 [exp] 69 / 1e-12 AT3G55640 489 / 2e-175 Mitochondrial substrate carrier family protein (.1) Potri.006G252100 [exp] 68 / 2e-12 AT4G32400 493 / 4e-175 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Potri.006G153600 [exp] 67 / 3e-12 AT4G26180 475 / 4e-170 Mitochondrial substrate carrier family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012635 [exp] 457 / 5e-161 AT2G46320 436 / 3e-153 Mitochondrial substrate carrier family protein (.1.2.3) Lus10038825 [exp] 407 / 7e-141 AT4G27940 538 / 0.0 ARABIDOPSIS MANGANESE TRACKING FACTOR FOR MITOCHONDRIAL SOD2, manganese tracking factor for mitochondrial SOD2 (.1) Lus10014940 [exp] 403 / 4e-139 AT4G27940 536 / 0.0 ARABIDOPSIS MANGANESE TRACKING FACTOR FOR MITOCHONDRIAL SOD2, manganese tracking factor for mitochondrial SOD2 (.1) Lus10013527 [exp] 72 / 1e-13 AT1G14560 428 / 5e-151 Mitochondrial substrate carrier family protein (.1) Lus10032690 [exp] 69 / 1e-12 AT4G26180 493 / 4e-177 Mitochondrial substrate carrier family protein (.1) Lus10008572 [exp] 69 / 2e-12 AT4G26180 494 / 4e-177 Mitochondrial substrate carrier family protein (.1) Lus10004689 [exp] 67 / 3e-12 AT3G55640 482 / 1e-172 Mitochondrial substrate carrier family protein (.1) Lus10000906 [exp] 66 / 8e-12 AT5G46800 482 / 1e-173 A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1) Lus10002026 [exp] 65 / 3e-11 AT4G32400 525 / 0.0 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Lus10013518 [exp] 65 / 3e-11 AT5G56450 485 / 8e-174 Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [poplar] [flax] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Potri.002G167700.2 pacid=42778988 polypeptide=Potri.002G167700.2.p locus=Potri.002G167700 ID=Potri.002G167700.2.v4.1 annot-version=v4.1 ATGGCGGGATCATCAAGGCAGAGCTTGCCTTCATGGATAACTGCAGCTGCAGCAACAACAACCACAACAAGAGTTGATATTGAAGGAATCAACAAAGAAG GTGGTCCTAAAAATGAGGAATCAAAATCAGTTCCATCAGCCTCAGATTTTGATTTAGGTTTTGTTGAGAGAGCTTTCGCTGCCGCTGGTGCCGCTGTTCT TTCCGCCGTCATTGTTAACCCTCTCGATGTTGCCAAGACAAGGTTGCAGGCACAGGCAGCTGGAGTTCCTTACCAAGGTCTATGTGGAACGGCGAGTTTT GAATCAAATACGATGTTTCCTTGTGTGAAAAGTTCATCGCATGCAGTTCCTGGCTCGCAACAATTGTGCGCTTCAGAATGTAATCGGTACAAGGGAGCAT TGGATGTTTTCAATAAAGTGATTCGACAGGAAGGTATTGGAAGGCTGTGGAGAGGCACAAATGCAAGCTTAGCTTTGGCTGTCCCTACTGTTGGAATCTA CATGCCTTGTTACGACATTTTCCGGAATTCAATGGAAGAATTTACAATTCAGAATTGCCCAGCCTTGACACCTTATGTCCCGCTAGTTGCAGGGGCAGTT GCACGCTCAATATCTTGTATTACTTGTTATCCAGTGGAGCTGGCAAGGACCCGCATGCAGGCATTTAAAGAAACACAAGCTGGTGTGAAGCCTTCAGGAG TGTGGAAGACATTAATTGAGGTCATCAATCCAGTTGGGGGAACAAACAACACTCAAAAGTTGCAAAGCTACCGCATCCTTTGGACTGGACTTGGAGCACA GCTTGCTCGTGATGTCCCCTTCTCTGCAATCTGCTGGGCAACCCTTGAGCCTATCAGGAGACAAATTCTTGCTCTCATGGGTGATGAAGCTGGGGCATCT CGTGTCCTTGGGGCAAACTTTTCTGCTGGCTTTGTTGCAGGAACACTTGCAGCAGCTGCTACGTGTCCATTTGATGTCGCAAAGACCAGAAGGCAGATAG AGAAGGATCCGACTAGGGCATTAAATATGACTACAACACGAACATTGCTGGAGATCTGGAGGGATGGAGGAGTTAAGGGACTGTTTACAGGAGTTGGTCC CCGTGTTGCTCGTGCTGGCCCTTCTGTTGGAATAGTCGTTTCCTTTTACGAAGTTGTCAAGTACACTTTACATCACAGATACCACCAGTTCACAAAATGA
AA sequence Show only first row Show all	>Potri.002G167700.2 pacid=42778988 polypeptide=Potri.002G167700.2.p locus=Potri.002G167700 ID=Potri.002G167700.2.v4.1 annot-version=v4.1 MAGSSRQSLPSWITAAAATTTTTRVDIEGINKEGGPKNEESKSVPSASDFDLGFVERAFAAAGAAVLSAVIVNPLDVAKTRLQAQAAGVPYQGLCGTASF ESNTMFPCVKSSSHAVPGSQQLCASECNRYKGALDVFNKVIRQEGIGRLWRGTNASLALAVPTVGIYMPCYDIFRNSMEEFTIQNCPALTPYVPLVAGAV ARSISCITCYPVELARTRMQAFKETQAGVKPSGVWKTLIEVINPVGGTNNTQKLQSYRILWTGLGAQLARDVPFSAICWATLEPIRRQILALMGDEAGAS RVLGANFSAGFVAGTLAAAATCPFDVAKTRRQIEKDPTRALNMTTTRTLLEIWRDGGVKGLFTGVGPRVARAGPSVGIVVSFYEVVKYTLHHRYHQFTK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G46320			Mitochondrial substrate carrie...		Potri.002G167700 [exp]	0	1
AT1G08465	YABBY	YAB2	YABBY2, Plant-specific transcr...		Potri.016G067300 [exp]	2.00	0.9573
AT1G18660			zinc finger (C3HC4-type RING f...		Potri.012G068100 [exp]	4.24	0.9335
AT2G13360		SGAT, AGT1, AGT	L-serine:glyoxylate aminotrans...		Potri.001G253300 [exp]	5.19	0.9592	Pt-AGT.2
AT5G62165	MADS	FYF, AGL42	FOREVER YOUNG FLOWER, AGAMOUS-...		Potri.012G133000 [exp]	5.65	0.9456
					Potri.005G182750 [exp]	6.00	0.9526
AT5G54290		CcdA	cytochrome c biogenesis protei...		Potri.001G406700 [exp]	6.32	0.9476
AT5G13650		SVR3	SUPPRESSOR OF VARIEGATION 3, e...		Potri.006G053000 [exp]	9.48	0.9550
AT1G78510		SPS1	solanesyl diphosphate synthase...		Potri.001G380500 [exp]	10.95	0.9457
AT5G38660		APE1	acclimation of photosynthesis ...		Potri.004G102100 [exp]	18.49	0.9333
AT4G08920		OOP2, HY4, BLU1...	OUT OF PHASE 2, ELONGATED HYPO...		Potri.005G164700 [exp]	19.89	0.9423	CRY1.1

Compare expression of checked genes

Potri.002G167700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.