Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05620 959 / 0 TUBG2 ,ATGCP2 GAMMA-TUBULIN 2, ARABIDOPSIS THALIANA GAMMA-TUBULIN COMPLEX PROTEIN 2, gamma-tubulin complex protein 2 (.1) AT3G61650 957 / 0 TUBG1 gamma-tubulin (.1) AT5G44340 275 / 1e-87 TUB4 tubulin beta chain 4 (.1) AT4G20890 272 / 1e-86 TUB9 tubulin beta-9 chain (.1) AT5G23860 270 / 1e-85 TUB8, b-TUB tubulin beta 8 (.1.2) AT2G29550 270 / 1e-85 TUB7 tubulin beta-7 chain (.1) AT5G62700 269 / 3e-85 atgcp3, TUB3 tubulin beta chain 3 (.1) AT5G62690 269 / 3e-85 TUB2 tubulin beta chain 2 (.1) AT1G20010 269 / 4e-85 TUB5 tubulin beta-5 chain (.1) AT1G75780 268 / 9e-85 TUB1 tubulin beta-1 chain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G094900 [exp] 980 / 0 AT3G61650 960 / 0.0 gamma-tubulin (.1) Potri.003G126800 [exp] 274 / 3e-87 AT5G12250 815 / 0.0 beta-6 tubulin (.1) Potri.001G104600 [exp] 272 / 2e-86 AT5G12250 831 / 0.0 beta-6 tubulin (.1) Potri.009G040200 [exp] 271 / 4e-86 AT5G23860 864 / 0.0 tubulin beta 8 (.1.2) Potri.001G464400 [exp] 270 / 7e-86 AT5G62700 850 / 0.0 tubulin beta chain 3 (.1) Potri.001G106100 [exp] 270 / 9e-86 AT5G23860 858 / 0.0 tubulin beta 8 (.1.2) Potri.006G095000 [exp] 270 / 9e-86 AT5G23860 852 / 0.0 tubulin beta 8 (.1.2) Potri.011G162500 [exp] 270 / 1e-85 AT5G23860 847 / 0.0 tubulin beta 8 (.1.2) Potri.003G125400 [exp] 270 / 2e-85 AT5G23860 857 / 0.0 tubulin beta 8 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007851 [exp] 929 / 0 AT3G61650 938 / 0.0 gamma-tubulin (.1) Lus10010986 [exp] 842 / 0 AT3G61650 851 / 0.0 gamma-tubulin (.1) Lus10002000 [exp] 277 / 3e-88 AT5G62690 824 / 0.0 tubulin beta chain 2 (.1) Lus10035497 [exp] 277 / 3e-88 AT5G62690 824 / 0.0 tubulin beta chain 2 (.1) Lus10008528 [exp] 273 / 8e-87 AT5G12250 837 / 0.0 beta-6 tubulin (.1) Lus10027476 [exp] 273 / 1e-86 AT5G23860 912 / 0.0 tubulin beta 8 (.1.2) Lus10039231 [exp] 273 / 1e-86 AT5G23860 912 / 0.0 tubulin beta 8 (.1.2) Lus10016448 [exp] 271 / 8e-86 AT5G23860 921 / 0.0 tubulin beta 8 (.1.2) Lus10040712 [exp] 270 / 1e-85 AT5G23860 923 / 0.0 tubulin beta 8 (.1.2) Lus10023348 [exp] 269 / 4e-85 AT2G29550 850 / 0.0 tubulin beta-7 chain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0566 [poplar] [flax] Tubulin PF00091 [poplar] [flax] Tubulin Tubulin/FtsZ family, GTPase domain CL0442 [poplar] [flax] Tubulin_C PF03953 [poplar] [flax] Tubulin_C Tubulin C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.002G167800.2 pacid=42779917 polypeptide=Potri.002G167800.2.p locus=Potri.002G167800 ID=Potri.002G167800.2.v4.1 annot-version=v4.1 ATGCCGAGAGAGATAATCACGCTGCAGGTAGGACAATGCGGGAACCAGATCGGCATGGAGTTCTGGAAACAGCTTTGCCTCGAACACGGCATCAGCAAAG ATGGCATCCTCGAAGATTTCGCAACTCAGGGAGGTGATAGGAAAGATGTGTTTTTCTACCAAGCGGATGATCAGCACTACATACCACGAGCTTTACTAAT TGATTTGGAGCCCAGGGTCATCAATGGAATTCAAAACAGTGAATATCGTAATCTTTACAATCAGGAGAACATCTTTGTTTCAGATCATGGTGGTGGTGCA GGAAATAACTGGGCCAGTGGATATCATCAGGGAAAGGGCGTTGAAGAGGATATAGTGGACATGATTGATAGAGAGGCAGATGGAAGTGATAGTCTTGAGG GTTTTGTTCTGTGTCATTCAATTGCTGGAGGAACAGGCTCAGGTATGGGCTCGTATCTGCTAGAGACTCTAAATGATCGCTATAGCAAAAAGTTGGTACA GACATACAGTGTATTTCCTAACCAGATGGAGACAAGTGATGTGGTAGTCCAACCCTATAACTCACTTTTAACACTTAAGAGACTGACTCTAAATGCGGAT TGTGTTGTCGTTCTGGACAATACTGCACTGAATAGAATTGCTGTTGAGCGCCTACATCTGTCAAATCCCACATTTGCTCAAACAAACTCTTTGGTATCTA CTGTAATGTCTGCTAGCACGACTACTCTGCGGTATCCAGGATATATGAACAATGACTTGGTTGGTCTTCTTGCATCGTTAATTCCAACACCAAGATGTCA TTTTCTTATGACTGGATATACACCACTCACAGTGGAGCGCCAGGCTAATGTGATTCGTAAAACTACTGTACTGGATGTTATGAGGAGACTGTTGCAGACC AAGAATATCATGGTTTCCTCTTATGCGCGAACAAAAGAAGCTAGTCAAGCAAAGTACATTTCAATATTGAATATTATTCAGGGAGAAGTGGACCCTACTC AGGTCCATGAAAGTTTGCAGAGGATTCGTGAAAGAAAGCTCGTTAACTTTATTGAGTGGGGTCCTGCAAGTATTCAGGTTGCTCTGTCTAGAAAGTCTCC CTATGTTCAAACTGCCCACAGGGTAAGTGGTCTCATGCTAGCAAGCCACACTAGCATCCGCCACCTCTTCAGCAAATGTTTGAGCCAGTATGAGAAGCTG AGAAAAAAGCAAGCATTTCTTGACAACTACAGAAAATTTCCGATGTTTGCTGACAACGATCTTTCTGAATTCGATGAATCACGGGACATAATTGAGAGTT TGGTTGATGAATATAAAGCCTGCGAGTCCCCAGATTACATCAAATGGGGAATGGAGGATCCCAACAATCTTCTAACAGAAGAAGGCAATGCCAAAGGCAC AGCAGATCCGAAATTGGCAATTTAA
AA sequence Show only first row Show all	>Potri.002G167800.2 pacid=42779917 polypeptide=Potri.002G167800.2.p locus=Potri.002G167800 ID=Potri.002G167800.2.v4.1 annot-version=v4.1 MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDQHYIPRALLIDLEPRVINGIQNSEYRNLYNQENIFVSDHGGGA GNNWASGYHQGKGVEEDIVDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNAD CVVVLDNTALNRIAVERLHLSNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQT KNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKL RKKQAFLDNYRKFPMFADNDLSEFDESRDIIESLVDEYKACESPDYIKWGMEDPNNLLTEEGNAKGTADPKLAI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05620		TUBG2 ,ATGCP2	GAMMA-TUBULIN 2, ARABIDOPSIS T...		Potri.002G167800 [exp]	0	1
AT2G23380		SET1, SDG1, ICU...	SETDOMAIN 1, SETDOMAIN GROUP 1...		Potri.007G045800 [exp]	3.16	0.9192	Pt-CLF.1
AT5G56590			O-Glycosyl hydrolases family 1...		Potri.005G253900 [exp]	4.47	0.9070
AT1G11680		EMB1738, CYP51A...	embryo defective 1738, CYTOCHR...		Potri.001G068400 [exp]	5.83	0.9132	CYP51.2
AT1G49730			Protein kinase superfamily pro...		Potri.004G140301 [exp]	11.18	0.8892
AT2G33990		IQD9	IQ-domain 9 (.1)		Potri.011G063200 [exp]	15.49	0.8839
AT3G50620			P-loop containing nucleoside t...		Potri.005G136900 [exp]	15.58	0.8995
AT2G44190		EMB3116, EDE1, ...	QWRF domain containing 5, EMBR...		Potri.016G000300 [exp]	15.90	0.8976
AT1G53300		TTL1	tetratricopetide-repeat thiore...		Potri.011G111500 [exp]	16.61	0.8787
AT1G67420			Zn-dependent exopeptidases sup...		Potri.008G175400 [exp]	16.97	0.8894
AT5G23860		TUB8, b-TUB	tubulin beta 8 (.1.2)		Potri.016G107300 [exp]	22.80	0.8998

Compare expression of checked genes

Potri.002G167800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.