Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46370 788 / 0 FIN219, JAR1 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4) AT4G03400 533 / 0 GH3-10, DFL2 DWARF IN LIGHT 2, Auxin-responsive GH3 family protein (.1) AT1G23160 382 / 8e-126 Auxin-responsive GH3 family protein (.1) AT5G54510 379 / 1e-124 DFL1, GH3.6 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) AT4G27260 379 / 3e-124 GH3.5, WES1 Auxin-responsive GH3 family protein (.1) AT2G23170 376 / 2e-123 GH3.3 Auxin-responsive GH3 family protein (.1) AT5G13320 374 / 7e-123 WIN3, GDG1, PBS3, GH3.12 HOPW1-1-INTERACTING 3, AVRPPHB SUSCEPTIBLE 3, GRETCHEN HAGEN 3.12, GH3-LIKE DEFENSE GENE 1, Auxin-responsive GH3 family protein (.1) AT1G48660 374 / 8e-123 Auxin-responsive GH3 family protein (.1) AT4G37390 372 / 1e-121 AUR3, YDK1, GH3-2, BRU6 YADOKARI 1, AUXIN UPREGULATED 3, Auxin-responsive GH3 family protein (.1) AT1G59500 364 / 1e-118 GH3.4 Auxin-responsive GH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G095500 [exp] 1043 / 0 AT2G46370 790 / 0.0 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4) Potri.013G144300 [exp] 563 / 0 AT4G03400 852 / 0.0 DWARF IN LIGHT 2, Auxin-responsive GH3 family protein (.1) Potri.019G103500 [exp] 562 / 0 AT4G03400 897 / 0.0 DWARF IN LIGHT 2, Auxin-responsive GH3 family protein (.1) Potri.001G410400 [exp] 385 / 5e-127 AT5G54510 1109 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Potri.007G050300 [exp] 382 / 1e-125 AT2G14960 959 / 0.0 Auxin-responsive GH3 family protein (.1) Potri.001G298300 [exp] 381 / 1e-125 AT2G14960 1016 / 0.0 Auxin-responsive GH3 family protein (.1) Potri.009G092900 [exp] 381 / 2e-125 AT2G14960 1014 / 0.0 Auxin-responsive GH3 family protein (.1) Potri.011G129700 [exp] 377 / 9e-124 AT5G54510 1088 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Potri.013G151100 [exp] 369 / 1e-120 AT5G54510 1014 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003039 [exp] 870 / 0 AT2G46370 784 / 0.0 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4) Lus10005151 [exp] 868 / 0 AT2G46370 784 / 0.0 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4) Lus10039797 [exp] 515 / 5e-177 AT4G03400 769 / 0.0 DWARF IN LIGHT 2, Auxin-responsive GH3 family protein (.1) Lus10026600 [exp] 369 / 1e-120 AT2G14960 950 / 0.0 Auxin-responsive GH3 family protein (.1) Lus10013887 [exp] 369 / 2e-120 AT2G14960 949 / 0.0 Auxin-responsive GH3 family protein (.1) Lus10014804 [exp] 368 / 7e-120 AT5G54510 977 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Lus10003598 [exp] 366 / 4e-119 AT5G54510 981 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Lus10018565 [exp] 362 / 8e-118 AT4G03400 495 / 1e-169 DWARF IN LIGHT 2, Auxin-responsive GH3 family protein (.1) Lus10018510 [exp] 356 / 2e-115 AT5G54510 859 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Lus10010391 [exp] 350 / 4e-113 AT4G37390 904 / 0.0 YADOKARI 1, AUXIN UPREGULATED 3, Auxin-responsive GH3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [poplar] [flax] ANL PF03321 [poplar] [flax] GH3 GH3 auxin-responsive promoter
Representative CDS sequence Show only first row Show all	>Potri.002G168200.1 pacid=42777881 polypeptide=Potri.002G168200.1.p locus=Potri.002G168200 ID=Potri.002G168200.1.v4.1 annot-version=v4.1 ATGCTAGAGAAAAAAATGGAAGGAATTAACACTAATAAAGTGATAGAGGAATTTGAAGCATTGACTAAAGATGCTGGAGGTGTTCAGAGAGAAACTCTGA AGAAGATTTTGGAAGAGAATGGATCTGCTGAGTATTTGCAGAACTTGGGTCTTAATGGAAAGTCTGACCCTGAGAGTTTCAAGTCTTGTGTTCCACTTGT TACTCACGAAGACTTGGAAGCTTATATTCACAGAATTGCTGAAGGTGATTCTTCTTCTGTTCTCACTGGGAAACCCATATCTGACATGTCTTTGAGTTCT GGCACTACTCAGGGTAAGAGAAAGTTTGTACCTTTCAACGATGAATTGATGGAAAACACCTTGCAGATATATAGAACTTCTTTTGCTTTCAGAAACAGAG AATTCCCACTGGAGAAAGGAAAGTCATTACAGTTTGTCTACAGCAGCAAGCCAGGGAAAACAAAAGGGGGTTTAGGTGCAGGAACTGCCACAACAAATCT CTTCCGCAATTCGAAATACAAAAGTGGAATGAAGGCAATTCAGTTCCAATGCTGCAGCCCTGATGAAGTAATATTTGGTCCTGATTTCCACCAATCATTA TACTGCCATCTCTTATGCGGGCTACTCTTTCGCGAAGAAATTCAATTTGTGTTCTCTACGTTTGCTCATAGCATTGTCCTTGCATTCCGGACATTTGAAC AAGTCTGGGAGGAGCTCTGCAATGATATACGTGATGGGGAACTAAGCAGCCGAGTCACTGCCCTTTCTGTCAGAATGGCAATGCGGAAACTGCTTAGGCC AAACCCTGAATTGGCTGATTTAATCTATAAAAAATGCTCAGGATTGAGTAATTGGTATGGTTTAATACCAGAATTATTCCCCAATGCTAAGTACATCTAT GGGATAATGACTGGGTCAATGGAGCCTTATCTGAAGAAATTGAGGCACTATGCAGGGGAGCTGCCATTGATGAGTGCTGATTATGGTTCTTCAGAAGGGT GGATTGCAGCGAATGTCAATCCAAAATTGCCCCCTGAGTTGGCTACTTTTGCTGTACTTCCTAATATTGGATATTTTGAATTCATTCCTCTTCAGGACAA CGCTGAGTGCATGTATAAGGAATCCAAGCCAGTGGGTCTGACTGAAGTCAAGATTGGTGAAGATTATGAGATCGTCGTCACCAATTTTGCAGGGTTGTAC AGGTACAGGCTGGGAGATGTGGTGAGGGTTATGGGCTTCCATAACTCAACCCCAGAGCTTAAATTTGTATGCAGGAGGAACCTTATCCTTTCCATAAACA TTGATAAGAACACCGAGAAAGATTTGCAGCTGTCTGTAGAAGAAGCTGGCAAGCTGTTAGCTGAGGAAAAACTTGAAGTAGTTGACTTCAGCAGTCTGGT TGAAGTATCCACAGACCCTGGCCGCTATGTTATCTTTCTGGAAATTAGTGGCGAAGCTAGCGAGGAGGTGTTGCAAGAGTGTTGCAATTGCTTGGACCGA TCCTTTGTTGATGCAGGCTATGTCAGTTCACGAAAGGTCAAAACCATTGGACCCCTCGAGCTCCGAGTCGTTTGGAGAGGAACCTTCCTGAAGATTTTGG AGCATTACCTAGGATTAGGAACTGTTGTTAGCCAGTTTAAAACACCACGTTGTGTTGGGCCCATGAACAACAAGGTGCAGCAAATCCTGTGTAATAACGT TGCTAAGACCTACTTTAGCACCGCGTTTTAG
AA sequence Show only first row Show all	>Potri.002G168200.1 pacid=42777881 polypeptide=Potri.002G168200.1.p locus=Potri.002G168200 ID=Potri.002G168200.1.v4.1 annot-version=v4.1 MLEKKMEGINTNKVIEEFEALTKDAGGVQRETLKKILEENGSAEYLQNLGLNGKSDPESFKSCVPLVTHEDLEAYIHRIAEGDSSSVLTGKPISDMSLSS GTTQGKRKFVPFNDELMENTLQIYRTSFAFRNREFPLEKGKSLQFVYSSKPGKTKGGLGAGTATTNLFRNSKYKSGMKAIQFQCCSPDEVIFGPDFHQSL YCHLLCGLLFREEIQFVFSTFAHSIVLAFRTFEQVWEELCNDIRDGELSSRVTALSVRMAMRKLLRPNPELADLIYKKCSGLSNWYGLIPELFPNAKYIY GIMTGSMEPYLKKLRHYAGELPLMSADYGSSEGWIAANVNPKLPPELATFAVLPNIGYFEFIPLQDNAECMYKESKPVGLTEVKIGEDYEIVVTNFAGLY RYRLGDVVRVMGFHNSTPELKFVCRRNLILSINIDKNTEKDLQLSVEEAGKLLAEEKLEVVDFSSLVEVSTDPGRYVIFLEISGEASEEVLQECCNCLDR SFVDAGYVSSRKVKTIGPLELRVVWRGTFLKILEHYLGLGTVVSQFKTPRCVGPMNNKVQQILCNNVAKTYFSTAF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G46370		FIN219, JAR1	JASMONATE RESISTANT 1, FAR-RED...		Potri.002G168200 [exp]	0	1
AT1G69310	WRKY	ATWRKY57, WRKY5...	WRKY DNA-binding protein 57 (....		Potri.008G094000 [exp]	3.46	0.9137
AT1G20070			unknown protein		Potri.002G019700 [exp]	5.47	0.8888
AT3G17860	ZIM	TIFY6B, JAI3, J...	JASMONATE-INSENSITIVE 3, jasmo...		Potri.012G044900 [exp]	6.32	0.9222
AT1G07250		UGT71C4	UDP-glucosyl transferase 71C4 ...		Potri.016G014300 [exp]	8.24	0.9016
AT4G04610		1-Apr, PRH19, A...	PAPS REDUCTASE HOMOLOG 19, APS...		Potri.004G012100 [exp]	12.60	0.9021
AT1G70000	MYB		myb-like transcription factor ...		Potri.010G039233 [exp]	14.14	0.8778
AT4G16490			ARM repeat superfamily protein...		Potri.006G015100 [exp]	16.27	0.8992
AT2G31305		INH3	inhibitor-3 (.1)		Potri.005G067400 [exp]	16.49	0.8914
AT4G39700			Heavy metal transport/detoxifi...		Potri.010G005300 [exp]	17.97	0.8811
					Potri.006G044300 [exp]	21.56	0.8699

Compare expression of checked genes

Potri.002G168200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.