Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61660 56 / 9e-11 unknown protein AT2G46375 44 / 2e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G095600 [exp] 145 / 2e-45 AT3G61660 65 / 5e-14 unknown protein Potri.003G137600 [exp] 56 / 7e-11 AT3G61660 57 / 1e-11 unknown protein Potri.001G094000 [exp] 56 / 1e-10 AT3G61660 55 / 1e-10 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005152 [exp] 63 / 1e-13 AT3G61660 58 / 1e-11 unknown protein Lus10032366 [exp] 51 / 6e-09 AT3G61660 61 / 1e-12 unknown protein Lus10033949 [exp] 49 / 5e-08 AT3G61660 59 / 5e-12 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G168300.1 pacid=42778883 polypeptide=Potri.002G168300.1.p locus=Potri.002G168300 ID=Potri.002G168300.1.v4.1 annot-version=v4.1 ATGAATAAAACATTAGAGGCCAAAACAGATGATCAACAACAAGAAGAAGAGAAAGCATTGGCCATATGGGATTTAGGCAGCCCATTATATGACTCGCATG AAGTGGTGTCCCTCGCTCATGTCATCGAGCGGCACCTCATGACAGTACTGCCATCTCCTGGAGGATCAAAAGGGTTCTCGCCCAAGAAAATTTCTCAAGC ATCTGTCGTCGACCCTGCTGCAATATTGGTGTCAAATATGGGCTCCAAGAGCGAAACCAAAAGAGTTCGTTCTTCTTCTAAATTGAACACCTTGAGTGAG TTTGTGAGGAGAAAGTTGAGGATAAAGAAGAAGATTGGATCACACAGAAGGATGGATAATTCCGAGAAGTTGAAAGCAGGACATTGTAGCTCTTGTATCA AGTTTGGCTTGTGA
AA sequence Show only first row Show all	>Potri.002G168300.1 pacid=42778883 polypeptide=Potri.002G168300.1.p locus=Potri.002G168300 ID=Potri.002G168300.1.v4.1 annot-version=v4.1 MNKTLEAKTDDQQQEEEKALAIWDLGSPLYDSHEVVSLAHVIERHLMTVLPSPGGSKGFSPKKISQASVVDPAAILVSNMGSKSETKRVRSSSKLNTLSE FVRRKLRIKKKIGSHRRMDNSEKLKAGHCSSCIKFGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G61660			unknown protein		Potri.002G168300 [exp]	0	1
AT2G14045			unknown protein		Potri.019G014100 [exp]	2.00	0.9325
AT5G01970			unknown protein		Potri.016G141300 [exp]	2.44	0.9190
AT1G03900		ABCI18, ATNAP4	ATP-binding cassette I18, non-...		Potri.005G226400 [exp]	6.32	0.9204	NAP4.2
AT4G14147		ARPC4	protein binding (.1.2)		Potri.017G057400 [exp]	7.34	0.8674
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Potri.014G161600 [exp]	10.72	0.8970
AT5G44860			unknown protein		Potri.012G125800 [exp]	10.95	0.8644
AT1G60940		SNRK2-10, SNRK2...	SNF1-RELATED KINASE 2B, SUCROS...		Potri.004G218200 [exp]	12.08	0.8159	Pt-ASK1.1
AT5G53340			Galactosyltransferase family p...		Potri.003G136000 [exp]	14.56	0.9050
AT4G00750			S-adenosyl-L-methionine-depend...		Potri.014G075700 [exp]	17.14	0.8953
AT1G52150	HD	ATHB15, ICU4, C...	INCURVATA 4, CORONA, Homeobox-...		Potri.001G188800 [exp]	17.32	0.8752	ATHB.12

Compare expression of checked genes

Potri.002G168300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.