Plant FIBer expression Database

Potri.002G168500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G58800 415 / 1e-145 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007354
[exp]
427 / 1e-150 AT3G58800 387 / 1e-134 unknown protein
PFAM info
Representative CDS sequence
>Potri.002G168500.1 pacid=42779757 polypeptide=Potri.002G168500.1.p locus=Potri.002G168500 ID=Potri.002G168500.1.v4.1 annot-version=v4.1
ATGGCGAAGCGTGGAGCCAAATTGAAGGCCTTAGTTGGACTTCAAAACTGCCGGGTGCCTGTTGTGGTTACGTGTCTGGTTGTGATACTTGTATTGTTAA
TATTGTTGTTCTGCAACAATGGGAAAAGCCCTGATTCTTCTTTTGGATATCCGATAAAAAAGTGGAATTCTTTCGAGTCAGTGCAATTTAACCCAACAAT
AGAGCTGAGGAATGGAACAGATGTGATATGGCAAATACCCAGTTTGCCAAAAGCAGTTCTCTTTGTGGCTCATGGATGCGATGGCAGAGCTGCTAACTTT
TGGGACAGGTCTTCAAGCTGCCCTAATTGCATTGGTTTGCCTGAGGAAAGGCTGCTTGTTCTTCATGCTCTTGCTCGTAAATTTGCCGTGATCACAATTT
CAAGCGCAGGGAGATGCTGGACATTTGGGGAGGAAAGATTAATTGTTAAGAATATAATACAATGGTGGGCTCAAACACATAATCTTGAATCACTTCCTCT
TGTAGCCTTGGGGGCCTCTTCTGGTGGATACTTCGTCTCTGCAGTCGCCACCAATTTGAGGTTCAGTAGCATAACACTTATGATTGCTGAAGGGAAGTTT
GACCAAATGGATATCACAGTGAACTACCCACCCACGCTTTTTGTTCACATGCCTAAAGACTCGTATAGGCAGCAAAAGATAAGTGAGTTTATAGAAGTTC
TGAAGAACAAGGGCATTGATGCGGCAGAGGTTGAATGCATGGAGTTTCCTTTGTCACCAAGTTTCTTAGCTGATAGAATCCCAGGAATGAATCAAACTGT
TTCTGCTAAGTTGTTTGAGCTATTTCAGGTCAAGAGTTTTGTTGATGGGAACGGATATATGAAGAAAGATGGGCGAGCAACGCGATGGAAAGAAGCTCTC
CGTGAATGCAAGAACCTTGTGCTGGATAAGAGTATGGTCCAACACGTGCAGGAGGAACTCAATCTTGCATTTGCTTACCATGAAATGACTAGCCTGCAGT
CTGAGCAAATATTTAAATGGTTTGAATCTCATTTGAACTAA
AA sequence
>Potri.002G168500.1 pacid=42779757 polypeptide=Potri.002G168500.1.p locus=Potri.002G168500 ID=Potri.002G168500.1.v4.1 annot-version=v4.1
MAKRGAKLKALVGLQNCRVPVVVTCLVVILVLLILLFCNNGKSPDSSFGYPIKKWNSFESVQFNPTIELRNGTDVIWQIPSLPKAVLFVAHGCDGRAANF
WDRSSSCPNCIGLPEERLLVLHALARKFAVITISSAGRCWTFGEERLIVKNIIQWWAQTHNLESLPLVALGASSGGYFVSAVATNLRFSSITLMIAEGKF
DQMDITVNYPPTLFVHMPKDSYRQQKISEFIEVLKNKGIDAAEVECMEFPLSPSFLADRIPGMNQTVSAKLFELFQVKSFVDGNGYMKKDGRATRWKEAL
RECKNLVLDKSMVQHVQEELNLAFAYHEMTSLQSEQIFKWFESHLN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G58800 unknown protein Potri.002G168500
[exp]
0 1
AT5G53340 Galactosyltransferase family p... Potri.003G136000
[exp]
6.48 0.9103
AT4G27720 Major facilitator superfamily ... Potri.015G008100
[exp]
11.61 0.8951
AT3G27000 ATARP2, WRM, AR... WURM, actin related protein 2 ... Potri.001G326600
[exp]
11.74 0.9068 Pt-ARP2.1
AT3G46060 ARA3, Ara-3, At... RAB GTPase homolog 8A (.1.2.3) Potri.009G027900
[exp]
14.14 0.8682 RAB8.1
AT5G39510 ZIG1, SGR4, ATV... SHOOT GRAVITROPSIM 4, VESICLE ... Potri.004G115700
[exp]
14.83 0.8881
AT2G14045 unknown protein Potri.019G014100
[exp]
20.78 0.8818
AT4G28550 Ypt/Rab-GAP domain of gyp1p su... Potri.005G227400
[exp]
21.90 0.8843
AT2G35120 Single hybrid motif superfamil... Potri.015G122500
[exp]
22.53 0.8891
AT5G32450 RNA binding (RRM/RBD/RNP motif... Potri.013G055100
[exp]
22.91 0.8708
AT3G45850 P-loop containing nucleoside t... Potri.009G026000
[exp]
22.97 0.8879

Potri.002G168500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.