Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01070 596 / 0 UGT72B1, GT72B1 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) AT1G01420 551 / 0 UGT72B3 UDP-glucosyl transferase 72B3 (.1) AT1G01390 529 / 0 UDP-Glycosyltransferase superfamily protein (.1) AT3G50740 309 / 2e-100 UGT72E1 UDP-glucosyl transferase 72E1 (.1) AT5G26310 305 / 8e-99 UGT72E3 UDP-Glycosyltransferase superfamily protein (.1) AT5G66690 302 / 9e-98 UGT72E2 UDP-Glycosyltransferase superfamily protein (.1) AT2G18570 299 / 1e-96 UDP-Glycosyltransferase superfamily protein (.1) AT4G36770 267 / 2e-84 UDP-Glycosyltransferase superfamily protein (.1) AT2G18560 248 / 4e-78 UDP-Glycosyltransferase superfamily protein (.1) AT3G16520 240 / 4e-74 UGT88A1 UDP-glucosyl transferase 88A1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G096100 [exp] 822 / 0 AT4G01070 610 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.003G138200 [exp] 576 / 0 AT4G01070 539 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.014G096000 [exp] 567 / 0 AT4G01070 544 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.014G041800 [exp] 389 / 2e-131 AT4G01070 390 / 9e-132 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.007G030500 [exp] 348 / 2e-115 AT2G18570 494 / 8e-173 UDP-Glycosyltransferase superfamily protein (.1) Potri.007G030400 [exp] 338 / 1e-111 AT3G50740 566 / 0.0 UDP-glucosyl transferase 72E1 (.1) Potri.007G030300 [exp] 329 / 4e-108 AT3G50740 496 / 1e-173 UDP-glucosyl transferase 72E1 (.1) Potri.007G029800 [exp] 323 / 1e-105 AT3G50740 478 / 3e-166 UDP-glucosyl transferase 72E1 (.1) Potri.014G041900 [exp] 313 / 1e-102 AT4G01070 295 / 2e-95 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029452 [exp] 628 / 0 AT4G01070 582 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10005950 [exp] 614 / 0 AT4G01070 573 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10029453 [exp] 508 / 3e-178 AT4G01070 515 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10005951 [exp] 505 / 4e-177 AT4G01070 510 / 5e-179 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10039588 [exp] 420 / 1e-143 AT4G01070 419 / 2e-143 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10001906 [exp] 410 / 6e-140 AT4G01070 431 / 1e-147 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10003900 [exp] 403 / 7e-137 AT4G01070 411 / 4e-140 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10001905 [exp] 387 / 1e-130 AT1G01420 391 / 3e-132 UDP-glucosyl transferase 72B3 (.1) Lus10003944 [exp] 336 / 1e-110 AT4G01070 400 / 1e-135 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10024035 [exp] 323 / 1e-105 AT3G50740 486 / 3e-169 UDP-glucosyl transferase 72E1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.002G168600.1 pacid=42780198 polypeptide=Potri.002G168600.1.p locus=Potri.002G168600 ID=Potri.002G168600.1.v4.1 annot-version=v4.1 ATGGCACAAACAGATGCACCAGCCCATGTAGCAATTTTACCGAGTCCGGGGATGGGTCATCTCATCCCTCTCGTTGAGCTAGCCAAGAGACTCGTTCACC AACACAACTTTTCAATCACTTTCGTTATCCCAACAGACGGTTCTACCTCTAAGGCACAGAGATCAGTTCTTGGATCACTCCCTAGCGCAATTCACTCAGT ATTTCTCCCCCAAGTTAATCTAAGTGACCTCCCTGAAGATGTCAAGATTGAAACCACAATTAGCCATACAGTCGCCCGGTCACTCCCTTCTCTACGTGAT GTTTTCAGGTCTCTAGTTGATGGAGGCGCCAGGGTTGTGGCCTTGGTTGTTGATCTTTTTGGGACTGATGCATTTGACGTTGCTAGAGAATTCAATGTCT CTCCTTACATTTTCTTTCCTTCTACGGCCATGGCTCTGTCTTTATTCTTTCATTTGCCAAAGCTTGATGAGATGGTTTCTTGCGAATACAGAGAGATGCA AGAACCCGTGAAAATACCCGGGTGCTTACCGATTCATGGGGGAGAGTTGCTTGACCCGACTCAAGATCGAAAGAATGACGCGTACAAATGGCTTCTTTAC CATACAAATAGGTATAGAATGGCTGAGGGTGTGATGGTAAATAGCTTCATGGACTTGGAAAAGGGAGCTCTAAAGGCTTTGCAAGAGGTAGAACCTGGTA AACCAACCGTTTACCCCGTCGGTCCACTGGTGAATATGGATTCCAGTGCTGGCGTTGAAGGGTCTGAGTGTTTGAGGTGGCTAGATGATCAGCCACACGG CTCAGTATTATTTGTTTCATTTGGGAGTGGTGGGACCCTCTCTTTGGATCAGATAACTGAATTGGCTTTGGGTTTGGAAATGAGCGAGCAGAGATTTTTG TGGGTTGTGAGGAGCCCAAATGATAAAGTATCTAATGCCACATTTTTTTCTGTGGATAGCCACAAAGACCCTTTTGATTTCTTACCGAAGGGTTTTTCGG ACAGGACCAAAGGGAGAGGTCTAGCAGTGCCGTCATGGGCGCCACAACCACAGGTGTTGGGTCACGGGTCAACAGGAGGGTTCTTAACCCATTGTGGCTG GAATTCCACCCTTGAAAGTGTCGTGAATGGTGTGCCATTAATCGTGTGGCCACTCTATGCTGAGCAGAAAATGAATGCATGGATGTTGACTAAGGATATT AAAGTGGCCTTAAGACCAAAGGCCAGCGAAAATGGCCTCATTGGAAGAGAGGAGATTGCAAATGCTGTGAGGGGTCTAATGGAAGGTGAAGAAGGGAAGA GGGTCCGCAACAGAATGAAGGACCTAAAAGAGGCAGCAGCCAGGGTGCTCAGTGAAGATGGATCTCTATCTGAGCTGGCTCACAAGTGGAAGAACCAAAA ATGCACTTAG
AA sequence Show only first row Show all	>Potri.002G168600.1 pacid=42780198 polypeptide=Potri.002G168600.1.p locus=Potri.002G168600 ID=Potri.002G168600.1.v4.1 annot-version=v4.1 MAQTDAPAHVAILPSPGMGHLIPLVELAKRLVHQHNFSITFVIPTDGSTSKAQRSVLGSLPSAIHSVFLPQVNLSDLPEDVKIETTISHTVARSLPSLRD VFRSLVDGGARVVALVVDLFGTDAFDVAREFNVSPYIFFPSTAMALSLFFHLPKLDEMVSCEYREMQEPVKIPGCLPIHGGELLDPTQDRKNDAYKWLLY HTNRYRMAEGVMVNSFMDLEKGALKALQEVEPGKPTVYPVGPLVNMDSSAGVEGSECLRWLDDQPHGSVLFVSFGSGGTLSLDQITELALGLEMSEQRFL WVVRSPNDKVSNATFFSVDSHKDPFDFLPKGFSDRTKGRGLAVPSWAPQPQVLGHGSTGGFLTHCGWNSTLESVVNGVPLIVWPLYAEQKMNAWMLTKDI KVALRPKASENGLIGREEIANAVRGLMEGEEGKRVRNRMKDLKEAAARVLSEDGSLSELAHKWKNQKCT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Potri.002G168600 [exp]	0	1
AT1G64500			Glutaredoxin family protein (....		Potri.003G141800 [exp]	3.00	0.9732
AT1G07010		AtSLP1	Shewenella-like protein phosph...		Potri.009G077900 [exp]	4.69	0.9590
AT5G24120		ATSIG5, SIG5, S...	SIGMA FACTOR 5, sigma factor E...		Potri.012G031100 [exp]	7.34	0.9570	Pt-SIGE.3
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.011G021332 [exp]	7.48	0.9515
AT4G17090		CT-BMY, BMY8, B...	BETA-AMYLASE 8, BETA-AMYLASE 3...		Potri.003G085500 [exp]	8.06	0.9543	Pt-BMY.2
AT5G25840			Protein of unknown function (D...		Potri.003G050200 [exp]	8.94	0.9433
AT3G56290			unknown protein		Potri.019G056400 [exp]	9.79	0.9545
AT3G17860	ZIM	TIFY6B, JAI3, J...	JASMONATE-INSENSITIVE 3, jasmo...		Potri.012G044900 [exp]	11.00	0.9494
AT4G34740		CIA1, ATASE2, A...	CHLOROPLAST IMPORT APPARATUS 1...		Potri.009G125600 [exp]	12.36	0.9509
AT3G18950			Transducin/WD40 repeat-like su...		Potri.004G148400 [exp]	12.96	0.9537

Compare expression of checked genes

Potri.002G168600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.