Plant FIBer expression Database

Potri.002G169100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G01050 400 / 1e-136 TROL thylakoid rhodanese-like (.1)
AT3G25480 104 / 3e-25 Rhodanese/Cell cycle control phosphatase superfamily protein (.1)
AT5G23060 42 / 0.0006 CaS calcium sensing receptor (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G096500
[exp]
558 / 0 AT4G01050 388 / 5e-132 thylakoid rhodanese-like (.1)
Potri.002G239800
[exp]
105 / 6e-25 AT3G25480 251 / 2e-82 Rhodanese/Cell cycle control phosphatase superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029448
[exp]
374 / 1e-126 AT4G01050 404 / 2e-138 thylakoid rhodanese-like (.1)
Lus10005947
[exp]
369 / 4e-124 AT4G01050 415 / 1e-141 thylakoid rhodanese-like (.1)
Lus10005853
[exp]
92 / 1e-20 AT3G25480 219 / 1e-70 Rhodanese/Cell cycle control phosphatase superfamily protein (.1)
Lus10001215
[exp]
85 / 4e-18 AT3G25480 208 / 2e-66 Rhodanese/Cell cycle control phosphatase superfamily protein (.1)
PFAM info
Representative CDS sequence
>Potri.002G169100.3 pacid=42779748 polypeptide=Potri.002G169100.3.p locus=Potri.002G169100 ID=Potri.002G169100.3.v4.1 annot-version=v4.1
ATGAAGGCCCTCAATGCTGCAAGCTTGACACCATTATCTGTTCTTTGTGAGAGAAGAGCAGAGACCAGAAAATCTTTATCGCTCCCTACAGTTTCACCAC
TCAAATTATCTCATTCTGACTCTTTAAGCGCGAGCCGGTCAGCTGCACAAGAATGTCTATCAAGGACTTTACATGGTGGTGTGGTGCTACTATCTTCAGT
TCTTAGTACTGGGCTAGCTAGAGCTTTAACATATGAAGAAGCACTAGAAAAACCTGCGAGTCCCTTCTCATCTGATTTTGATGTTAATGGGATCCTAGAT
GGTTTCATCAAATTTGGATCAGAAAACCCAACAATTATAGCAGGTAGTGTTACAGTTTTGGCAGTTCCTCTGATTCTGTCTCTGGTGCTAAACAAGCCTA
AGTCATGGGGTGTTGAGTCTGCAAAAAATGCTTATGCAGCATTGGGTGATGACGCAAAGGCCCAGTTACTTGATATAAGAGCAACAGTGGAGTTTCGACA
AGTGGGCAGTCCTGATATCAGCGGTTTGAGCAAGAAGCCAGCGTCAATTGTTTATAAAAGTGAAGATAAGCCAGGTTTCTTGAAGAAGCTGTCTTTGAAG
TTTAAGGAACCAGAGAACACCACATTGTTCATTCTAGACAAATTTGATGGCAACTCTGAATTGGTTGCGGAGTTGGTCACTGTAAATGGATTCAAAGCAG
CTTATGCAATCAAAGATGGAGCAGAGGGACCCCACGGATGGATGAAATGTATTTTGCAGAATAGTGGGCTTCCCTGGATACCACCAAAGAAAGCATTGAG
TCTTGATCTTAGCGATCTATCAGACACTATCAGTGGTGCATTTGGAGAGGGCTCCGGTGCCTTGTCTGTCACCTTTGCACTTTCAGCAGCTGCTGGCTTA
GGTGTACTGGCATTCTCAGAGATGGAAACAATACTCCAAGTATTAGGCTCAGCTGCTCTAATTCAGTTTGTGAGTAAGAAACTCCTGTTTGCTGAGGACC
GTAAGCAAACTCTGGAACAAGTTGATGAATTCTTGACCACCAAGATTGCACCTAAAGAGTTAGGGGATGAATTGAAGGATATAGGGAGGGCTCTTCTACC
AGTGCCAGTGACTATCAAGGCCCTTCCTGCTCCCACAGAAGCAAGTCCAGAACCTGCTGTTGCTGATAGTACTGTACAGAAAGCAGAAGCTGCTTCCCAG
ATAAATTCAGTACCCATAACAGAAGCTAAAGCTGTATCAGTTTCTGGATTTTCAAGGCCGCTTTCTCCGTATCCTTATTATTCGGATCTCAAGCCTCCAA
CATCACCAACCCCATCTAAACCGTAA
AA sequence
>Potri.002G169100.3 pacid=42779748 polypeptide=Potri.002G169100.3.p locus=Potri.002G169100 ID=Potri.002G169100.3.v4.1 annot-version=v4.1
MKALNAASLTPLSVLCERRAETRKSLSLPTVSPLKLSHSDSLSASRSAAQECLSRTLHGGVVLLSSVLSTGLARALTYEEALEKPASPFSSDFDVNGILD
GFIKFGSENPTIIAGSVTVLAVPLILSLVLNKPKSWGVESAKNAYAALGDDAKAQLLDIRATVEFRQVGSPDISGLSKKPASIVYKSEDKPGFLKKLSLK
FKEPENTTLFILDKFDGNSELVAELVTVNGFKAAYAIKDGAEGPHGWMKCILQNSGLPWIPPKKALSLDLSDLSDTISGAFGEGSGALSVTFALSAAAGL
GVLAFSEMETILQVLGSAALIQFVSKKLLFAEDRKQTLEQVDEFLTTKIAPKELGDELKDIGRALLPVPVTIKALPAPTEASPEPAVADSTVQKAEAASQ
INSVPITEAKAVSVSGFSRPLSPYPYYSDLKPPTSPTPSKP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G01050 TROL thylakoid rhodanese-like (.1) Potri.002G169100
[exp]
0 1
AT1G74070 Cyclophilin-like peptidyl-prol... Potri.012G058700
[exp]
1.00 0.9691
AT5G46110 TPT, APE2 triose-phosphate ⁄ phosp... Potri.004G048900
[exp]
2.82 0.9581 Pt-APE2.2
AT1G50900 LTD, GDC1 LHCP translocation defect, Gra... Potri.001G420900
[exp]
8.12 0.9550
AT5G67150 HXXXD-type acyl-transferase fa... Potri.003G057001
[exp]
11.22 0.9216
AT1G50320 ATHX, ATX thioredoxin X (.1) Potri.007G074000
[exp]
14.89 0.9504
AT3G05170 Phosphoglycerate mutase family... Potri.003G131200
[exp]
15.42 0.8965
AT2G30570 PSBW photosystem II reaction center... Potri.005G218800
[exp]
16.24 0.9514
AT1G20340 PETE2, DRT112 PLASTOCYANIN 2, DNA-DAMAGE-REP... Potri.002G016000
[exp]
17.60 0.9508 PETE.2
AT1G07780 TRP6, PAI1 TRANSIENT RECEPTOR POTENTIAL 6... Potri.012G145600
[exp]
22.36 0.9030
AT2G33855 unknown protein Potri.004G048400
[exp]
22.49 0.9297

Potri.002G169100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.