Plant FIBer expression Database

Potri.002G169350 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.002G169350.1 pacid=42779280 polypeptide=Potri.002G169350.1.p locus=Potri.002G169350 ID=Potri.002G169350.1.v4.1 annot-version=v4.1
ATGATGGTTTTGTGTTTTAAGACAAAACATATACTACCAAGTATCGAGGCAGGCTGGGGGCTCTTTTGGGGGTTTAAACAGGTTCTGTCTTGCTTACAAA
GGCTCTCCGTAGTCTCAGGATGGCAATCGTTGCTCGCTCTCCCTCAGGGCTTCCAACGCAGTAAGCAGGTACGTGCATGTCAGCATATTCTCGCTGCAGG
CTCGAGGTCTTTGGTGAGAGTAGTGATCAAAAGCTGTCATGATTTTGGCAGACAAGAAAAAACAATATCATCTGTAAATTCTTTGCTGTTATTCTTCGAA
AGAGCCACGCACAACAGACTTGCTCCTATGCACCCAAGAAAGCTTTCCGTCCTCTTCAAGGTAGTGAAACTGAAAGATACTCTTAAAAACAATAAAGGCA
AACAACATTTCTTAATAAACGCAGAAACCTCCTGA
AA sequence
>Potri.002G169350.1 pacid=42779280 polypeptide=Potri.002G169350.1.p locus=Potri.002G169350 ID=Potri.002G169350.1.v4.1 annot-version=v4.1
MMVLCFKTKHILPSIEAGWGLFWGFKQVLSCLQRLSVVSGWQSLLALPQGFQRSKQVRACQHILAAGSRSLVRVVIKSCHDFGRQEKTISSVNSLLLFFE
RATHNRLAPMHPRKLSVLFKVVKLKDTLKNNKGKQHFLINAETS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.002G169350
[exp]
0 1
AT2G29110 ATGLR2.8 glutamate receptor 2.8 (.1) Potri.018G012800
[exp]
3.46 0.9047
AT1G07250 UGT71C4 UDP-glucosyl transferase 71C4 ... Potri.006G010000
[exp]
9.89 0.8798
AT3G25905 CLE27 CLAVATA3/ESR-RELATED 27 (.1) Potri.008G120800
[exp]
20.49 0.8692
AT2G04160 AIR3 AUXIN-INDUCED IN ROOT CULTURES... Potri.011G050100
[exp]
29.94 0.8316
Potri.008G112066
[exp]
31.62 0.7900
AT2G04160 AIR3 AUXIN-INDUCED IN ROOT CULTURES... Potri.011G050000
[exp]
32.15 0.8320
AT2G04160 AIR3 AUXIN-INDUCED IN ROOT CULTURES... Potri.011G050300
[exp]
35.72 0.8265
AT2G36230 HISN3, APG10 ALBINO AND PALE GREEN 10, Aldo... Potri.017G124800
[exp]
83.06 0.8170
Potri.013G101050
[exp]
96.36 0.8217
Potri.008G218622
[exp]
136.28 0.8082

Potri.002G169350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.