Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61680 576 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT1G02660 370 / 5e-118 alpha/beta-Hydrolases superfamily protein (.1) AT3G62590 351 / 2e-111 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G097200 [exp] 1118 / 0 AT3G61680 580 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G197900 [exp] 384 / 6e-123 AT1G02660 561 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009811 [exp] 707 / 0 AT3G61680 640 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10040915 [exp] 396 / 2e-130 AT3G61680 415 / 1e-138 alpha/beta-Hydrolases superfamily protein (.1) Lus10010031 [exp] 379 / 2e-121 AT1G02660 702 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10036334 [exp] 369 / 2e-117 AT1G02660 684 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF01764 [poplar] [flax] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Potri.002G169600.2 pacid=42778168 polypeptide=Potri.002G169600.2.p locus=Potri.002G169600 ID=Potri.002G169600.2.v4.1 annot-version=v4.1 ATGGCATGCAATTCAATGGCCATTCCCTCCTCCCCAGCGACTACAGCACAAAAGGATGTGTTCAAAGAACACGATGGTCTTTTCCGTTCAAACTCTGGCA AGGACTTCTGCAACCGAGCCACTATGCAGAGATCCTATTCAGATAACCACCTCTGTTATTCCATTAACCGTGTACGAGCTGAATCAACACAACCAAAGCT AAAGAGCAGCCGATCAGTTGGGATTTTCCCATTTCAAATTGCTAGCTCCATTATCCCAACATCACTTCGGTCATTTCTGTTTGACCCAGAGACAAGCAAG GACATGAATGTTGCGAAGGATGGAATTGAAATATCGTCAGATAAGGGTGGGAATATAGGGGACAATTCAGACGACGGCAGTGCTAACGATGAACTAGGAG AGGTAAAGAGAGCAAATTGGGTGGAGCGGATTTACGAGATCGGAATTCATCGGAGGAAGAGACAACAGAAAGAGGATATATATGGAAAAGAGTCATCTGA TGCCAACAAAAATGGTGATAGCAATTGTGAGGGTGGTTGCACGGTAGACTACAACTCAGAAGAGGAAGGAGGAGAAACAAAATATGATCGGGAAACGTTT TCAAGATTTTTGGCTCCCGTTGCATGGTCTGATATCAAGCTATTCTCAAAGCTGGCTTTCTTGTGCAACATGGCTTACGTTATACCAGAGATTAAGGCCA TGGATTTGAGGAGATATCATGGCCTACACTTTGTAACATCTTCTTTAGAGAAGAAGGCGGAGGCTGCTGCCATGAAAGAGAAGCTCGATCAGGACTCTAC TCACGTCCCGGCAGCTGCTTCTGTAGTTGCCAAATCCAACCCGCAGAACACAGAGGAACCTGAGCAGAAGCACCCAATACGGTCATCTGTTGCTTATGGG ATTGCTGCCTCAGCAGCATCTTATGTCCAATCACATGCACGAGGCCTTCTTTGTCATGGCGCTCAACCTCAGCAGGAAGGTGAGTGTGCTGATTCAAGCA GTACTGGAAACCAACCAGTTGAGGACAGAGACCGACCAGTTGAAGATTGTGAGAGATCTCAACGAGTATATAAAAAATCAGAGGTGGCTGCTTACGTTGC AGCTTCAACTATGACAGCAGTGGTTGCAGCTGGGGAGAAGGAAAAACAGGAGGCAGCAAGGGACCTTCAGTCACTTCACTCGGCACCTTGTGAATGGTTT GTTTGTGATGACATAAGGACGTACACACGATGCTTTGTGATCCAGGGATCTGACTCCCTTGCATCTTGGCAGGCAAACCTCCTATTTGAACCAGCTAAGT TTGAGGGTACAGATGTGCTTGTCCACAGAGGAATTTATGAAGCGGCAAAGGGAATTTATGACCAGTTCGTGCCAGAAATTATGGAACACTTGAACAAGTA TGGAAAGCGTGCTAAGCTTCAATTTACTGGCCATTCTCTAGGGGGTAGCCTCTCTCTTTTAGTTCACTTGATGCTACTAACCAGAAAGTTTGTCAAGCCC TCCACTCTTAGGCCAGTGGTCACTTTTGGCTCACCATTTGTATTCTGTGGAGGCCAAAAAATCCTAAATCATTTGGGGTTGGATGACAACCATGTACATT GTGTAGTGATGCATAGAGATATTGTCCCAAGAGCTTTCTCCTGCAACTACCCCAACCATGTGGCACTAGTCCTCATGCGATTAAGTGGCTCCTTCCAGTC ACACCCTTGTCTAATTAAGAATAAATTTTTGTACTCTCCACTTGGGAAATTATTCATACTCCAACCTGATGAGAAGTCATCTCCTCCACACCCTTTACTG CCTCCAGGCAGTGCACTGTATGCTTTCAACAAAACCCAATATGGGTTCTCTGCAAGTGCCATAAAGGCATTCCTGAATTGTCCCCACCCACTGGAAACTC TTAGTGATCCTAAAGCCTACGGCTCAGAAGGTACAATTTTAAGAGACCATGACTCAAGCAACTACCTAAACGCAGTGAACAAGGTTATAAGGCAAAACTT AAAGATGGTTCGTAAAGTACAAGAGCAGAGGAATCAATTGTGGCCATTGCTGGCCTCACCGTCTCCACATTCATGGAACCATGAAAACACTCTGGAAAAG AGTGTGCTAGGGACCAAGGAAGTCATGACTCGTGTCTGA
AA sequence Show only first row Show all	>Potri.002G169600.2 pacid=42778168 polypeptide=Potri.002G169600.2.p locus=Potri.002G169600 ID=Potri.002G169600.2.v4.1 annot-version=v4.1 MACNSMAIPSSPATTAQKDVFKEHDGLFRSNSGKDFCNRATMQRSYSDNHLCYSINRVRAESTQPKLKSSRSVGIFPFQIASSIIPTSLRSFLFDPETSK DMNVAKDGIEISSDKGGNIGDNSDDGSANDELGEVKRANWVERIYEIGIHRRKRQQKEDIYGKESSDANKNGDSNCEGGCTVDYNSEEEGGETKYDRETF SRFLAPVAWSDIKLFSKLAFLCNMAYVIPEIKAMDLRRYHGLHFVTSSLEKKAEAAAMKEKLDQDSTHVPAAASVVAKSNPQNTEEPEQKHPIRSSVAYG IAASAASYVQSHARGLLCHGAQPQQEGECADSSSTGNQPVEDRDRPVEDCERSQRVYKKSEVAAYVAASTMTAVVAAGEKEKQEAARDLQSLHSAPCEWF VCDDIRTYTRCFVIQGSDSLASWQANLLFEPAKFEGTDVLVHRGIYEAAKGIYDQFVPEIMEHLNKYGKRAKLQFTGHSLGGSLSLLVHLMLLTRKFVKP STLRPVVTFGSPFVFCGGQKILNHLGLDDNHVHCVVMHRDIVPRAFSCNYPNHVALVLMRLSGSFQSHPCLIKNKFLYSPLGKLFILQPDEKSSPPHPLL PPGSALYAFNKTQYGFSASAIKAFLNCPHPLETLSDPKAYGSEGTILRDHDSSNYLNAVNKVIRQNLKMVRKVQEQRNQLWPLLASPSPHSWNHENTLEK SVLGTKEVMTRV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G61680			alpha/beta-Hydrolases superfam...		Potri.002G169600 [exp]	0	1
					Potri.018G019850 [exp]	4.58	0.9247
AT4G35470		PIRL4, DREB1C	plant intracellular ras group-...		Potri.007G065000 [exp]	13.22	0.8778
AT3G07090			PPPDE putative thiol peptidase...		Potri.002G241700 [exp]	14.56	0.9023
AT1G09140		ATSRP30.1, ATSR...	Serine/Arginine-Rich Protein S...		Potri.005G024600 [exp]	18.08	0.8986
AT1G31280		AGO2	argonaute 2, Argonaute family ...		Potri.015G117401 [exp]	18.46	0.8796
AT5G58590		RANBP1	RAN binding protein 1 (.1)		Potri.006G102400 [exp]	20.04	0.8130
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.004G017900 [exp]	20.44	0.8865
AT2G32120		HSP70T-2	heat-shock protein 70T-2 (.1.2...		Potri.010G088600 [exp]	21.54	0.8979
AT4G10250		ATHSP22.0	HSP20-like chaperones superfam...		Potri.013G089200 [exp]	22.91	0.8971
AT5G37670		HSP15.7CI	HSP20-like chaperones superfam...		Potri.017G130700 [exp]	26.49	0.8954

Compare expression of checked genes

Potri.002G169600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.