Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01340 910 / 0 ACBK1, ATCNGC10 cyclic nucleotide gated channel 10 (.1.2) AT4G01010 907 / 0 ATCNGC13 cyclic nucleotide-gated channel 13 (.1) AT5G53130 903 / 0 ATCNGC1, CNGC1 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) AT2G46430 876 / 0 CNGC3.C, ATCNGC3 cyclic nucleotide gated channel 3 (.1.2) AT2G23980 740 / 0 ATCNGC6 CYCLIC NUCLEOTIDE GATED CHANNEL 6, cyclic nucleotide-gated channel 6 (.1) AT4G30560 736 / 0 ATCNGC9 cyclic nucleotide gated channel 9 (.1.2) AT5G57940 735 / 0 ATCNGC5 cyclic nucleotide gated channel 5 (.1.2.3) AT1G19780 707 / 0 ATCNGC8 cyclic nucleotide gated channel 8 (.1) AT1G15990 699 / 0 ATCNGC7 cyclic nucleotide gated channel 7 (.1) AT2G24610 644 / 0 ATCNGC14 cyclic nucleotide-gated channel 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G097900 [exp] 1281 / 0 AT1G01340 901 / 0.0 cyclic nucleotide gated channel 10 (.1.2) Potri.012G002200 [exp] 923 / 0 AT5G53130 1087 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.015G019100 [exp] 923 / 0 AT5G53130 1024 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.018G106100 [exp] 748 / 0 AT5G57940 1030 / 0.0 cyclic nucleotide gated channel 5 (.1.2.3) Potri.001G043900 [exp] 707 / 0 AT1G19780 967 / 0.0 cyclic nucleotide gated channel 8 (.1) Potri.003G183000 [exp] 690 / 0 AT1G19780 893 / 0.0 cyclic nucleotide gated channel 8 (.1) Potri.009G010700 [exp] 662 / 0 AT2G28260 1052 / 0.0 cyclic nucleotide-gated channel 15 (.1) Potri.018G097600 [exp] 644 / 0 AT4G30360 1015 / 0.0 cyclic nucleotide-gated channel 17 (.1) Potri.017G067000 [exp] 625 / 0 AT3G48010 964 / 0.0 cyclic nucleotide-gated channel 16 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019014 [exp] 911 / 0 AT5G53130 1122 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Lus10003395 [exp] 882 / 0 AT5G53130 1117 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Lus10014925 [exp] 847 / 0 AT5G53130 1031 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Lus10038815 [exp] 795 / 0 AT5G53130 971 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Lus10036260 [exp] 714 / 0 AT4G30560 1102 / 0.0 cyclic nucleotide gated channel 9 (.1.2) Lus10041662 [exp] 701 / 0 AT1G19780 1056 / 0.0 cyclic nucleotide gated channel 8 (.1) Lus10024073 [exp] 700 / 0 AT1G19780 1033 / 0.0 cyclic nucleotide gated channel 8 (.1) Lus10022155 [exp] 693 / 0 AT4G30560 1095 / 0.0 cyclic nucleotide gated channel 9 (.1.2) Lus10015510 [exp] 664 / 0 AT4G30360 1004 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10019983 [exp] 658 / 0 AT4G30360 1000 / 0.0 cyclic nucleotide-gated channel 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF00027 [poplar] [flax] cNMP_binding Cyclic nucleotide-binding domain CL0030 [poplar] [flax] Ion_channel PF00520 [poplar] [flax] Ion_trans Ion transport protein
Representative CDS sequence Show only first row Show all	>Potri.002G170000.2 pacid=42780106 polypeptide=Potri.002G170000.2.p locus=Potri.002G170000 ID=Potri.002G170000.2.v4.1 annot-version=v4.1 ATGAATCTCAAAGGAGATAAATTTGTCAGGTTTCAGGATTGGAGATCAGAGAAATCCTTCAGTTCAGAGCAGGGATGCTCCATTGAAGATGGATTTTATG CAAGAAAAGTCAAACCAACTTTCAATGCAGTTTGGGATAATATCCGAAGAGGGTGGGAGATGGGTTCGGAGAGGATTAGAAGCCTAAAGAAACCATTGAG ATTCTATCCTAGGGGTGCTCGCTCAGTGAAAGAACAAGGACCTAAGAAGAAGATTCTTGATCCACAAGGTTCATTTCTCCAGAATTGGAACAAAATATTT ATGCTTGTTTGCGTGCTTGCAGTGGCTATAGACCCCTTATTCTTTTACATCCCATGGGTTAATGGCACTGACAAAGACAAATGCCTTGATCTGGACTATA AGATGGAAGCTGCTGCTTGTGTTCTTCGTACATTCATTGATGTCGTATACATACTTCGCATAGCCTTCCAATTCCGCACTGGGTTCATAGCCCCTTCTTC TCGTGTATTTGGGAGGGGCGAGTTGGTTGAGGATCCTAAAGTTATCGCCAAAAAATACCTTACCTCTCACTTTATCGTTGATATTCTAGCAATCCTTCCA CTTCCTCAGGTAGTGGTTATAATCATCCTTCCATCAGTTGATGGTCCGGTTTCATTGGCTGCGAAGAACTTGCTTGAGATTGTAATTTTCTCCCAATACA TACCAAGATTTGTTCGAATCTATCCATTGTTCAAAGAAATAACTAGAACTTCTGGCATACTTACTGAAACAGCATGGGCGGGAGCTGTTTTCAACCTCTT TCTCTACATGCTAGCCAGTCATATAATTGGAGCCTTTTGGTACTTGTTCTCAATCGAACGAGAAGATTCATGCTGGCGTGAAGTGTGTAAGGACCGAGCA GGGTGTGATTCTACGTACTGGTATTGTGGAAATCATCGTCCAGAAAACTACACATTCCTGACTGAATCATGCCCTTTTATCCAACCTGATCAAATTCAAA ACTCATCGGTCTTCAACTTTGGTATATTTATTGATGCTCTTGATTCTGGAGTGGTGGAATCAACTTATTTTCCGCGGAAATTCTTTTACTGCTTTTGGTG GGGTTTGCGCAATCTCAGCTCTCTTGGACAAAACCTTAAAACAAGCACCTTCATTGGAGAGATTCTCTTTGCCATCTTCATATCCATCACTGGATTGGTT TTGTTTGCACTGCTTATTGGTAATATGCAGAAATATCTCGAATCCACAACTGTTAGAATAGAGGAAATGAGAGTGAAAAGGAGGGATTCAGAGCAGTGGA TGTCCCACCGAATGCTCCCTGATAACCTGAAGGAACGAATTAGGCGGCATGAACAGTACAAATGGCAAGAAACCAGAGGAGTGGAAGAGCGGGGGCTAAT TCGTAATCTTCCTAAAGATCTCAGGAGGGACATAAACCGCCATCTTTGCTTGGATCTGATCAAGAAAGTGCCAATATTTGAAAAAATGGATGAGCACATA TTGGATGCAGTATGCGATCGTCTCAAGGCAACTCTTTACACCAAGGATAGCTACATTGTTCGAGAAGGGGACCCAGTTGACGAGATGCTATTTATCATGC GAGGTACTCTTTTAAGTGTGACCACTAATGGTGGAAGAACTGGTTTTTTCAATGCTGTCTCTCTCAAGGCTGGTGACTTCTGTGGAGAAGGGCTTCTTAC ATGGGCCCTAGATCCCCAATCCTCCAACCTCCCTATCTCAACTAGAACAGTACAAGCTCTGTCAGAGGTTGAGGCCTTTGCTTTGGAAGCTGAAGACTTG AAGACTGTAGCTTCCCAGTTTCGCCGATTACATCACAAGGATATCCAGCACACATTCAGGTTGTTCTCAGTGCAGTGGAGGACGTGGGCAGCATGCTTCA TACAGGCAGCTTGGCATCGTCACTGTAGGAGGAAGCAGGCTAAAAGCTTACGTCAAGCAGAAGAAAAACTGCAAGATGCTTTGGCAAACGAGGCCAGTAC TTCGCCAAGCCTTGATGTTGCCATTTATGCATCACAGTTTGCTGCCAACGCATTAAGAAATCTGCGGCAGAATGGCACACACGCAGCTAGATTGCCGCAG AGATTGTCATTTCTGCCTCAAAAACCAACAGAGCCGGACTTTTCCGCTCAAAATCACAAGTAA
AA sequence Show only first row Show all	>Potri.002G170000.2 pacid=42780106 polypeptide=Potri.002G170000.2.p locus=Potri.002G170000 ID=Potri.002G170000.2.v4.1 annot-version=v4.1 MNLKGDKFVRFQDWRSEKSFSSEQGCSIEDGFYARKVKPTFNAVWDNIRRGWEMGSERIRSLKKPLRFYPRGARSVKEQGPKKKILDPQGSFLQNWNKIF MLVCVLAVAIDPLFFYIPWVNGTDKDKCLDLDYKMEAAACVLRTFIDVVYILRIAFQFRTGFIAPSSRVFGRGELVEDPKVIAKKYLTSHFIVDILAILP LPQVVVIIILPSVDGPVSLAAKNLLEIVIFSQYIPRFVRIYPLFKEITRTSGILTETAWAGAVFNLFLYMLASHIIGAFWYLFSIEREDSCWREVCKDRA GCDSTYWYCGNHRPENYTFLTESCPFIQPDQIQNSSVFNFGIFIDALDSGVVESTYFPRKFFYCFWWGLRNLSSLGQNLKTSTFIGEILFAIFISITGLV LFALLIGNMQKYLESTTVRIEEMRVKRRDSEQWMSHRMLPDNLKERIRRHEQYKWQETRGVEERGLIRNLPKDLRRDINRHLCLDLIKKVPIFEKMDEHI LDAVCDRLKATLYTKDSYIVREGDPVDEMLFIMRGTLLSVTTNGGRTGFFNAVSLKAGDFCGEGLLTWALDPQSSNLPISTRTVQALSEVEAFALEAEDL KTVASQFRRLHHKDIQHTFRLFSVQWRTWAACFIQAAWHRHCRRKQAKSLRQAEEKLQDALANEASTSPSLDVAIYASQFAANALRNLRQNGTHAARLPQ RLSFLPQKPTEPDFSAQNHK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G01340		ACBK1, ATCNGC10	cyclic nucleotide gated channe...		Potri.002G170000 [exp]	0	1
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Potri.001G270600 [exp]	1.73	0.9064
AT1G30755			Protein of unknown function (D...		Potri.002G021400 [exp]	3.16	0.9035
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Potri.001G270500 [exp]	4.24	0.8799
AT2G39420			alpha/beta-Hydrolases superfam...		Potri.010G212200 [exp]	5.47	0.8691
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Potri.007G044000 [exp]	7.07	0.8706
AT1G74360			Leucine-rich repeat protein ki...		Potri.015G061600 [exp]	8.71	0.8792
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Potri.001G270404 [exp]	12.64	0.8606
AT2G27660			Cysteine/Histidine-rich C1 dom...		Potri.012G038400 [exp]	16.15	0.8656
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Potri.019G020800 [exp]	17.83	0.8013
					Potri.011G047300 [exp]	18.33	0.8666	PPO3

Compare expression of checked genes

Potri.002G170000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.